Modeling the interactions of a peptide-major histocompatibility class I ligand with its receptors. II. Cross-reaction between a monoclonal antibody and two alpha-beta T cell receptors. - Didier Rognan; Jan Engberg; Anette Stryhn; Peter Sejer Andersen; Søren Buus (J. Comput. Aided Mol. Des., 2000)

Modeling the interactions of a peptide-major histocompatibility class I ligand with its receptors. I. Recognition by two alpha-beta T cell receptors. - Didier Rognan; Anette Stryhn; Lars Fugger; Stig Lyngbæk; Jan Engberg; Peter Sejer Andersen; Søren Buus (J. Comput. Aided Mol. Des., 2000)

Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. - Jens Kaae Christensen; Kasper Lamberth; Morten Nielsen 001; Claus Lundegaard; Peder Worning; Sanne Lise Lauemøller; Søren Buus; Søren Brunak; Ole Lund (Neural Comput., 2003)

MHC Class I Epitope Binding Prediction Trained on Small Data Sets. - Claus Lundegaard; Morten Nielsen 001; Kasper Lamberth; Peder Worning; Christina Sylvester-Hvid; Søren Buus; Søren Brunak; Ole Lund (ICARIS, 2004)

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. - Morten Nielsen 001; Claus Lundegaard; Peder Worning; Christina Sylvester-Hvid; Kasper Lamberth; Søren Buus; Søren Brunak; Ole Lund (Bioinform., 2004)

The Immune Epitope Database and Analysis Resource. - Alessandro Sette; Huynh-Hoa Bui; John Sidney; Philip E. Bourne; Søren Buus; Ward Fleri; R. Kubo; Ole Lund; D. Nemazee; Julia V. Ponomarenko; Muthu Sathiamurthy; Scott Stewart; et al. (PRIB, 2006)

A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. - Bjoern Peters; Huynh-Hoa Bui; Sune Frankild; Morten Nielsen 001; Claus Lundegaard; Emrah Kostem; Derek Basch; Kasper Lamberth; Mikkel Harndahl; Ward Fleri; Stephen S. Wilson; John Sidney; et al. (PLoS Comput. Biol., 2006)

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. - Mette V. Larsen; Claus Lundegaard; Kasper Lamberth; Søren Buus; Ole Lund; Morten Nielsen 001 (BMC Bioinform., 2007)

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. - Claus Lundegaard; Kasper Lamberth; Mikkel Harndahl; Søren Buus; Ole Lund; Morten Nielsen 001 (Nucleic Acids Res., 2008)

Immune epitope database analysis resource (IEDB-AR). - Qing Zhang; Peng Wang 014; Yohan Kim; Pernille Haste-Andersen; John E. Beaver; Philip E. Bourne; Huynh-Hoa Bui; Søren Buus; Sune Frankild; Jason Greenbaum; Ole Lund; Claus Lundegaard; et al. (Nucleic Acids Res., 2008)

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. - Morten Nielsen 001; Claus Lundegaard; Thomas Blicher; Bjoern Peters; Alessandro Sette; Sune Justesen; Søren Buus; Ole Lund (PLoS Comput. Biol., 2008)

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. - Yohan Kim; John Sidney; Søren Buus; Alessandro Sette; Morten Nielsen 001; Bjoern Peters (BMC Bioinform., 2014)