SADI, SHARE, and the in silico scientific method. - Mark D. Wilkinson; E. Luke McCarthy; Benjamin P. Vandervalk; David Withers; Edward A. Kawas; Soroush Samadian (BMC Bioinform., 2010)

Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web. - Soroush Samadian; Bruce McManus; Mark D. Wilkinson (J. Biomed. Semant., 2012)

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets. - Soroush Samadian; Jeff P. Bruce; Trevor J. Pugh (PLoS Comput. Biol., 2018)