SWILL: A Simple Embedded Web Server Library. - Sotiria Lampoudi; David M. Beazley (USENIX ATC, FREENIX Track, 2002)

TiReX: Replica-exchange molecular dynamics using Tinker. - Evgeni S. Penev; Sotiria Lampoudi; Joan-Emma Shea (Comput. Phys. Commun., 2009)

Effect of excluded volume on 2D discrete stochastic chemical kinetics. - Sotiria Lampoudi; Daniel T. Gillespie; Linda R. Petzold (J. Comput. Phys., 2009)

Telescope Network Scheduling - Rationale and Formalisms. - Sotiria Lampoudi; Eric Saunders (ICORES, 2013)

An Integer Linear Programming Solution to the Telescope Network Scheduling Problem. - Sotiria Lampoudi; Eric Saunders; Jason Eastman (ICORES, 2015)