A specialized ODE integrator for the efficient computation of parameter sensitivities. - Pedro Gonnet; Sotiris Dimopoulos; Lukas Widmer; Jörg Stelling (BMC Syst. Biol., 2012)

Near-optimal experimental design for model selection in systems biology. - Alberto Giovanni Busetto; Alain Hauser; Gabriel Krummenacher; Mikael Sunnåker; Sotiris Dimopoulos; Cheng Soon Ong; Jörg Stelling; Joachim M. Buhmann (Bioinform., 2013)

Accurate cell segmentation in microscopy images using membrane patterns. - Sotiris Dimopoulos; Christian E. Mayer; Fabian Rudolf; Jörg Stelling (Bioinform., 2014)

fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy. - Oliver Hilsenbeck; Michael Schwarzfischer; Dirk Loeffler; Sotiris Dimopoulos; Simon Hastreiter; Carsten Marr; Fabian J. Theis; Timm Schroeder (Bioinform., 2017)