Towards an Aspect-Based Ranking Model for Clinical Trial Search. - Soumyadeep Roy; Koustav Rudra; Nikhil Agrawal; Shamik Sural; Niloy Ganguly (CSoNet, 2019)

Understanding Brand Consistency from Web Content. - Soumyadeep Roy; Niloy Ganguly; Shamik Sural; Niyati Chhaya; Anandhavelu Natarajan (WebSci, 2019)

Knowledge-Aware Neural Networks for Medical Forum Question Classification. - Soumyadeep Roy; Sudip Chakraborty; Aishik Mandal; Gunjan Balde; Prakhar Sharma; Anandhavelu Natarajan; Megha Khosla; Shamik Sural; Niloy Ganguly (CIKM, 2021)

An Integrated Approach for Improving Brand Consistency of Web Content: Modeling, Analysis, and Recommendation. - Soumyadeep Roy; Shamik Sural; Niyati Chhaya; Anandhavelu Natarajan; Niloy Ganguly (ACM Trans. Web, 2021)

GENEMASK: Fast Pretraining of Gene Sequences to Enable Few-Shot Learning. - Soumyadeep Roy; Jonas Wallat; Sowmya S. Sundaram; Wolfgang Nejdl; Niloy Ganguly (ECAI, 2023)

Interpretable Clinical Trial Search using Pubmed Citation Network. - Soumyadeep Roy; Niloy Ganguly; Shamik Sural; Koustav Rudra (ICDH, 2023)

Unlocking Efficiency: Adaptive Masking for Gene Transformer Models. - Soumyadeep Roy; Shamik Sural; Niloy Ganguly (ECAI, 2024)

Adaptive BPE Tokenization for Enhanced Vocabulary Adaptation in Finetuning Pretrained Language Models. - Gunjan Balde; Soumyadeep Roy; Mainack Mondal; Niloy Ganguly (EMNLP (Findings), 2024)

MEDVOC: Vocabulary Adaptation for Fine-tuning Pre-trained Language Models on Medical Text Summarization. - Gunjan Balde; Soumyadeep Roy; Mainack Mondal; Niloy Ganguly (IJCAI, 2024)

Beyond Accuracy: Investigating Error Types in GPT-4 Responses to USMLE Questions. - Soumyadeep Roy; Aparup Khatua; Fatemeh Ghoochani; Uwe Hadler; Wolfgang Nejdl; Niloy Ganguly (SIGIR, 2024)

Evaluation of LLMs in Medical Text Summarization: The Role of Vocabulary Adaptation in High OOV Settings. - Gunjan Balde; Soumyadeep Roy; Mainack Mondal; Niloy Ganguly (ACL (Findings), 2025)

Building Trustworthy AI Models for Medicine: From Theory to Applications. - Soumyadeep Roy; Sowmya S. Sundaram; Dominik Wolff; Niloy Ganguly (WSDM, 2025)

A Systematic Evaluation of Single-Cell Foundation Models on Cell-Type Classification Task. - Nicolas Steiner; Ziteng Li; Omid Vosoughi; Johanna Schrader; Soumyadeep Roy; Wolfgang Nejdl; Ming Tang (WSDM, 2025)