ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. - Guan Ning Lin; Zhipeng Cai 001; Guohui Lin; Sounak Chakraborty; Dong Xu 002 (BMC Bioinform., 2009)

Simultaneous cancer classification and gene selection with Bayesian nearest neighbor method: An integrated approach. - Sounak Chakraborty (Comput. Stat. Data Anal., 2009)

Bayesian binary kernel probit model for microarray based cancer classification and gene selection. - Sounak Chakraborty (Comput. Stat. Data Anal., 2009)

Bayesian adaptive nearest neighbor. - Ruixin Guo; Sounak Chakraborty (Stat. Anal. Data Min., 2010)

A Bayesian hybrid Huberized support vector machine and its applications in high-dimensional medical data. - Sounak Chakraborty; Ruixin Guo (Comput. Stat. Data Anal., 2011)

Predicting disease risks from highly imbalanced data using random forest. - Mohammad Khalilia; Sounak Chakraborty; Mihail Popescu (BMC Medical Informatics Decis. Mak., 2011)

Bayesian multiple response kernel regression model for high dimensional data and its practical applications in near infrared spectroscopy. - Sounak Chakraborty (Comput. Stat. Data Anal., 2012)

Bayesian nonlinear regression for large p small n problems. - Sounak Chakraborty; Malay Ghosh; Bani K. Mallick (J. Multivar. Anal., 2012)

Survival prediction and variable selection with simultaneous shrinkage and grouping priors. - Kyu Ha Lee; Sounak Chakraborty; Jianguo Sun (Stat. Anal. Data Min., 2015)

Variable selection for high-dimensional genomic data with censored outcomes using group lasso prior. - Kyu Ha Lee; Sounak Chakraborty; Jianguo Sun (Comput. Stat. Data Anal., 2017)

Bayesian kernel machine models for testing genetic pathway effects in prostate cancer prognosis. - Chang Xu; Sounak Chakraborty (Stat. Anal. Data Min., 2017)

Heritable genotype contrast mining reveals novel gene associations specific to autism subgroups. - Matthew Spencer; Nicole Takahashi; Sounak Chakraborty; Judith H. Miles; Chi-Ren Shyu (J. Biomed. Informatics, 2018)

A graph Laplacian prior for Bayesian variable selection and grouping. - Sounak Chakraborty; Aurélie C. Lozano (Comput. Stat. Data Anal., 2019)

Lag time between state-level policy interventions and change points in COVID-19 outcomes in the United States. - Tanujit Dey; Jaechoul Lee; Sounak Chakraborty; Jay Chandra; Anushka Bhaskar; Kenneth Zhang; Anchal Bhaskar; Francesca Dominici (Patterns, 2021)

Bayesian shrinkage models for integration and analysis of multiplatform high-dimensional genomics data. - Hao Xue 005; Sounak Chakraborty; Tanujit Dey (Stat. Anal. Data Min., 2024)

BayesMultiomics: An R Package for Bayesian Shrinkage Models for Integration and Analysis of Multi-Platform High-Dimensional Genomics Data. - Mansoo Cho; Tanujit Dey; Hao Xue 005; Sounak Chakraborty (Stat. Anal. Data Min., 2025)