GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. - Ziva Ramsak; Spela Baebler; Ana Rotter; Matej Korbar; Igor Mozetic; Björn Usadel; Kristina Gruden (Nucleic Acids Res., 2014)

quantGenius: implementation of a decision support system for qPCR-based gene quantification. - Spela Baebler; Miha Svalina; Marko Petek; Katja Stare; Ana Rotter; Marusa Pompe-Novak; Kristina Gruden (BMC Bioinform., 2017)

The need for standardisation in life science research - an approach to excellence and trust. - Susanne Hollmann; Andreas Kremer; Spela Baebler; Christophe Trefois; Kristina Gruden; Witold R. Rudnicki; Weida Tong; Aleksandra Gruca; Erik Bongcam-Rudloff; Chris T. A. Evelo; Alina S. Nechyporenko; Marcus Frohme; et al. (F1000Research, 2020)