Pre-calculated protein structure alignments at the RCSB PDB website. - Andreas Prlic; Spencer Bliven; Peter W. Rose; Wolfgang Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (Bioinform., 2010)

BioJava: an open-source framework for bioinformatics in 2012. - Andreas Prlic; Andrew D. Yates; Spencer Bliven; Peter W. Rose; Julius O. B. Jacobsen; Peter V. Troshin; Mark Chapman; Jianjiong Gao; Chuan Hock Koh; Sylvain Foisy; Richard C. G. Holland; Gediminas Rimsa; et al. (Bioinform., 2012)

Detection of circular permutations within protein structures using CE-CP. - Spencer E. Bliven; Philip E. Bourne; Andreas Prlic (Bioinform., 2015)

Structure-Preserving Rearrangements: Algorithms for Structural Comparison and Protein Analysis. - Spencer Bliven (2015)

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts. - Guido Capitani; Jose M. Duarte; Kumaran Baskaran; Spencer Bliven; Joseph C. Somody (Bioinform., 2016)

Systems biology of the structural proteome. - Elizabeth Brunk; Nathan Mih; Jonathan Monk; Zhen Zhang; Edward J. O'Brien; Spencer E. Bliven; Ke Chen; Roger L. Chang; Philip E. Bourne; Bernhard O. Palsson (BMC Syst. Biol., 2016)

Automated evaluation of quaternary structures from protein crystals. - Spencer Bliven; Aleix Lafita; Althea Parker; Guido Capitani; Jose M. Duarte (PLoS Comput. Biol., 2018)

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. - Spencer E. Bliven; Aleix Lafita; Peter W. Rose; Guido Capitani; Andreas Prlic; Philip E. Bourne (PLoS Comput. Biol., 2019)

BioJava 5: A community driven open-source bioinformatics library. - Aleix Lafita; Spencer Bliven; Andreas Prlic; Dmytro Guzenko; Peter W. Rose; Anthony R. Bradley; Paolo Pavan; Douglas Myers-Turnbull; Yana Valasatava; Michael L. Heuer; Matt Larson; Stephen K. Burley; et al. (PLoS Comput. Biol., 2019)

TRAL 2.0: Tandem Repeat Detection With Circular Profile Hidden Markov Models and Evolutionary Aligner. - Matteo Delucchi; Paulina Näf; Spencer Bliven; Maria Anisimova (Frontiers Bioinform., 2021)