GS-align for glycan structure alignment and similarity measurement. - Hui Sun Lee; Sunhwan Jo; Srayanta Mukherjee; Sang-Jun Park; Jeffrey Skolnick; Jooyoung Lee; Wonpil Im (Bioinform., 2015)

ARMDN: Associative and Recurrent Mixture Density Networks for eRetail Demand Forecasting. - Srayanta Mukherjee; Devashish Shankar; Atin Ghosh; Nilam Tathawadekar; Pramod Kompalli; Sunita Sarawagi; Krishnendu Chaudhury (CoRR, 2018)

QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs. - Fatima Zohra Smaili; Shuye Tian; Ambrish Roy; Meshari Alazmi; Stefan T. Arold; Srayanta Mukherjee; P. Scott Hefty; Wei Chen 029; Xin Gao 001 (Genom. Proteom. Bioinform., 2021)

Graph-Based Retriever Captures the Long Tail of Biomedical Knowledge. - Julien Delile; Srayanta Mukherjee; Anton Van Pamel; Leonid Zhukov (CoRR, 2024)

TEDDY: A Family Of Foundation Models For Understanding Single Cell Biology. - Alexis Chevalier; Soumya Ghosh; Urvi Awasthi; James Watkins; Julia Bieniewska; Nichita Mitrea; Olga Kotova; Kirill Shkura; Andrew Noble; Michael Steinbaugh; Julien Delile; Christoph Meier; et al. (CoRR, 2025)