Gene Identification in Bacterial and Organellar Genomes using GeneScan. - Ramakrishna Ramaswamy; Srinivasan Ramachandran (Comput. Chem., 1999)

The low complexity proteins from enteric pathogenic bacteria: Taxonomic parallels embedded in diversity. - Tannistha Nandi; Krishnamoorthy Kannan; Srinivasan Ramachandran (Silico Biol., 2003)

ArrayD: A general purpose software for Microarray design. - Anu Sharma; Gyan Prakash Srivastava; Vineet K. Sharma; Srinivasan Ramachandran (BMC Bioinform., 2004)

Clusters of proteins in archaeal and bacterial proteomes using compositional analysis. - Tannistha Nandi; Samir K. Brahmachari; Krishnamoorthy Kannan; Srinivasan Ramachandran (Silico Biol., 2004)

SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks. - Gaurav Sachdeva; Kaushal Kumar; Preti Jain; Srinivasan Ramachandran (Bioinform., 2005)

A Fast Inverse Kinematics Solver using Intersection of Circles. - Srinivasan Ramachandran; Nigel W. John (TPCG, 2013)

Animation Setup Transfer for 3D Characters. - Quentin Avril; Sarah Ribet; Donya Ghafourzadeh; Olivier Dionne; Srinivasan Ramachandran; Martin de Lasa; Sahel Fallahdoust; Eric Paquette (Comput. Graph. Forum, 2016)

Joint planar parameterization of segmented parts and cage deformation for dense correspondence. - Srinivasan Ramachandran; Donya Ghafourzadeh; Martin de Lasa; Tiberiu Popa; Eric Paquette (Comput. Graph., 2018)

Local Editing of Cross-Surface Mappings with Iterative Least Squares Conformal Maps. - Donya Ghafourzadeh; Srinivasan Ramachandran; Martin de Lasa; Tiberiu Popa; Eric Paquette (Graphics Interface, 2020)

Constraint-Based Spectral Space Template Deformation for Ear Scans. - Srinivasan Ramachandran; Tiberiu Popa; Eric Paquette (Graphics Interface, 2020)

A meta-analysis of comorbidities in COVID-19: Which diseases increase the susceptibility of SARS-CoV-2 infection? - Manoj Kumar Singh; Ahmed Mobeen; Amit Chandra 003; Sweta Joshi; Srinivasan Ramachandran (Comput. Biol. Medicine, 2021)

Single-view procedural braided hair modeling through braid unit identification. - Chao Sun; Srinivasan Ramachandran; Eric Paquette; Won-Sook Lee (Comput. Animat. Virtual Worlds, 2021)

Knowledgebase of potential multifaceted solutions to antimicrobial resistance. - Anasuya Bhargav; Srijanee Gupta; Surabhi Seth; Sweety James; Firdaus Fatima; Pratibha Chaurasia; Srinivasan Ramachandran (Comput. Biol. Chem., 2022)

Playbook workflow builder: Interactive construction of bioinformatics workflows. - Daniel J. B. Clarke; John Erol Evangelista; Zhuorui Xie; Giacomo B. Marino; Anna I. Byrd; Mano Ram Maurya; Sumana Srinivasan; Keyang Yu; Varduhi Petrosyan; Matthew E. Roth; Miroslav Milinkov; Charles Hadley King; et al. (PLoS Comput. Biol., 2025)

Type 2 diabetes mellitus associated pancreatic cancer prediction using combinations of machine learning models. - Surabhi Seth; Kumardeep Chaudhary; Srinivasan Ramachandran (Biomed. Signal Process. Control., 2026)