A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. - Mary E. Cosner; Robert K. Jansen; Bernard M. E. Moret; Linda A. Raubeson; Li-San Wang; Tandy J. Warnow; Stacia K. Wyman (ISMB, 2000)

New approaches for reconstructing phylogenies from gene order data. - Bernard M. E. Moret; Li-San Wang; Tandy J. Warnow; Stacia K. Wyman (ISMB (Supplement of Bioinformatics), 2001)

A New Implmentation and Detailed Study of Breakpoint Analysis. - Bernard M. E. Moret; Stacia K. Wyman; David A. Bader; Tandy J. Warnow; Mi Yan (Pacific Symposium on Biocomputing, 2001)

Automatic annotation of organellar genomes with DOGMA. - Stacia K. Wyman; Robert K. Jansen; Jeffrey L. Boore (Bioinform., 2004)

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. - Stephen Nayfach; Patrick H. Bradley; Stacia K. Wyman; Timothy J. Laurent; Alexander G. Williams; Jonathan A. Eisen; Katherine S. Pollard; Thomas J. Sharpton (PLoS Comput. Biol., 2015)

Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data. - Divya Ramamoorthy; Kristen Severson; Soumya Ghosh; Karen Sachs; Emily G. Baxi; Alyssa N. Coyne; Elizabeth Mosmiller; Lindsey Hayes; Aianna Cerezo; Omar Ahmad; Promit Roy; Steven Zeiler; et al. (Nat. Comput. Sci., 2022)