The Dynamics of T-Cell Receptor Repertoire Diversity Following Thymus Transplantation for DiGeorge Anomaly. - Stanca M. Ciupe; Blythe H. Devlin; M. Louise Markert; Thomas B. Kepler (PLoS Comput. Biol., 2009)

Antibody Responses during Hepatitis B Viral Infection. - Stanca M. Ciupe; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2014)

Modeling within-host and aerosol dynamics of SARS-CoV-2: The relationship with infectiousness. - Nora Heitzman-Breen; Stanca M. Ciupe (PLoS Comput. Biol., 2022)