Reconstructing tumor genome architectures. - Benjamin J. Raphael; Stanislav Volik; Colin C. Collins; Pavel A. Pevzner (ECCB, 2003)

Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. - Ali Bashir; Stanislav Volik; Colin C. Collins; Vineet Bafna; Benjamin J. Raphael (PLoS Comput. Biol., 2008)

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. - Andrew W. McPherson; Chunxiao Wu; Iman Hajirasouliha; Fereydoun Hormozdiari; Faraz Hach; Anna Lapuk; Stanislav Volik; Sohrab P. Shah; Colin C. Collins; Süleyman Cenk Sahinalp (Bioinform., 2011)

SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA. - Can Kockan; Faraz Hach; Iman Sarrafi; Robert H. Bell; Brian McConeghy; Kevin Beja; Anne Haegert; Alexander W. Wyatt; Stanislav Volik; Kim N. Chi; Colin C. Collins; Süleyman Cenk Sahinalp (Bioinform., 2017)

Alignment-free clustering of UMI tagged DNA molecules. - Baraa Orabi; Emre Erhan; Brian McConeghy; Stanislav V. Volik; Stephane Le Bihan; Robert Bell; Colin C. Collins; Cédric Chauve; Faraz Hach (Bioinform., 2019)

Phenotype prediction from single-cell RNA-seq data using attention-based neural networks. - Yuzhen Mao; Yen-Yi Lin; Nelson K. Y. Wong; Stanislav Volik; Funda Sar; Colin C. Collins; Martin Ester (Bioinform., 2024)