Mechanism of action of aspartic proteinases: Application of transition-state analogue theory. - Stanislaw Oldziej; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1996)

A New Approach to the Resolution of the Excitation-emission Spectra of Multicomponent Systems. - Adam Liwo; Piotr Skurski; Stanislaw Oldziej; Leszek Lankiewicz; Joanna Malicka; Wieslaw Wiczk (Comput. Chem., 1997)

A united-residue force field for off-lattice protein-structure simulations. I. Functional forms and parameters of long-range side-chain interaction potentials from protein crystal data. - Adam Liwo; Stanislaw Oldziej; Matthew R. Pincus; Ryszard J. Wawak; Shelly Rackovsky; Harold A. Scheraga (J. Comput. Chem., 1997)

A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization. - Adam Liwo; Matthew R. Pincus; Ryszard J. Wawak; Shelly Rackovsky; Stanislaw Oldziej; Harold A. Scheraga (J. Comput. Chem., 1997)

United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials. - Adam Liwo; Rajmund Kazmierkiewicz; Cezary Czaplewski; Malgorzata Groth; Stanislaw Oldziej; Ryszard J. Wawak; Shelly Rackovsky; Matthew R. Pincus; Harold A. Scheraga (J. Comput. Chem., 1998)

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. - Adam Liwo; Jaroslaw Pillardy; Cezary Czaplewski; Jooyoung Lee 002; Daniel R. Ripoll; Malgorzata Groth; Sylwia Rodziewicz-Motowidlo; Rajmund Kazmierkiewicz; Ryszard J. Wawak; Stanislaw Oldziej; Harold A. Scheraga (RECOMB, 2000)

Molecular Modeling of the Catalytic Domain of Serine/threonine Phosphatase-1with the Zn2+ and Mn2+ Di-nuclear Ion Centers in the Active Site. - Edyta Wozniak; Stanislaw Oldziej; Jerzy Ciarkowski (Comput. Chem., 2000)

Ab initio study of the mechanism of singlet-dioxygen addition to hydroxyaromatic compounds: Negative evidence for the involvement of peroxa and endoperoxide intermediates. - Maciej Bobrowski; Adam Liwo; Stanislaw Oldziej; Danuta Jeziorek; Tadeusz Ossowski (J. Comput. Chem., 2002)

Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMC. - Marian Nanias; Maurizio Chinchio; Stanislaw Oldziej; Cezary Czaplewski; Harold A. Scheraga (J. Comput. Chem., 2005)

Meta-computations on the CLUSTERIX Grid. - Roman Wyrzykowski; Norbert Meyer; Tomasz Olas; Lukasz Kuczynski; Bogdan Ludwiczak; Cezary Czaplewski; Stanislaw Oldziej (PARA, 2006)

A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low-Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United-Residue Force Field. - Maurizio Chinchio; Cezary Czaplewski; Stanislaw Oldziej; Harold A. Scheraga (Multiscale Model. Simul., 2006)

Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding Simulations. - Stanislaw Oldziej; Cezary Czaplewski; Adam Liwo; Harold A. Scheraga (BIBE, 2010)

A Maximum-Likelihood Approach to Force-Field Calibration. - Bartlomiej Zaborowski; Dawid Jagiela; Cezary Czaplewski; Anna Halabis; Agnieszka Lewandowska; Wioletta Zmudzinska; Stanislaw Oldziej; Agnieszka S. Karczynska; Christian Omieczynski; Tomasz K. Wirecki; Adam Liwo (J. Chem. Inf. Model., 2015)

Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. - Pawel Krupa; Anna Halabis; Wioletta Zmudzinska; Stanislaw Oldziej; Harold A. Scheraga; Adam Liwo (J. Chem. Inf. Model., 2017)

Correction to Maximum Likelihood Calibration of the UNRES Force Field for Simulation of Protein Structure and Dynamics. - Pawel Krupa; Anna Halabis; Wioletta Zmudzinska; Stanislaw Oldziej; Harold A. Scheraga; Adam Liwo (J. Chem. Inf. Model., 2018)