The Rat Genome Database 2009: variation, ontologies and pathways. - Melinda R. Dwinell; Elizabeth A. Worthey; Mary Shimoyama; Burcu Bakir-Gungor; Jeffrey DePons; Stanley J. F. Laulederkind; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Alexander Stoddard; Simon N. Twigger; et al. (Nucleic Acids Res., 2009)

The Rat Genome Database Curators: Who, What, Where, Why. - Mary Shimoyama; G. Thomas Hayman; Stanley J. F. Laulederkind; Rajni Nigam; Timothy Lowry; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Diane H. Munzenmaier; Melinda R. Dwinell; Simon N. Twigger; Howard J. Jacob (PLoS Comput. Biol., 2009)

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data. - Stanley J. F. Laulederkind; Mary Shimoyama; G. Thomas Hayman; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; et al. (Database J. Biol. Databases Curation, 2011)

Ontology searching and browsing at the Rat Genome Database. - Stanley J. F. Laulederkind; Marek Tutaj; Mary Shimoyama; G. Thomas Hayman; Timothy Lowry; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Shur-Jen Wang; Jeff de Pons; Melinda R. Dwinell; Howard J. Jacob (Database J. Biol. Databases Curation, 2012)

The Rat Genome Database 2013 - data, tools and users. - Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; Jennifer R. Smith; Timothy Lowry; Rajni Nigam; Victoria Petri; Jeff de Pons; Melinda R. Dwinell; Mary Shimoyama; Diane H. Munzenmaier; Elizabeth A. Worthey; et al. (Briefings Bioinform., 2013)

PhenoMiner: quantitative phenotype curation at the rat genome database. - Stanley J. F. Laulederkind; Weisong Liu; Jennifer R. Smith; G. Thomas Hayman; Shur-Jen Wang; Rajni Nigam; Victoria Petri; Timothy Lowry; Jeff de Pons; Melinda R. Dwinell; Mary Shimoyama (Database J. Biol. Databases Curation, 2013)

Analysis of disease-associated objects at the Rat Genome Database. - Shur-Jen Wang; Stanley J. F. Laulederkind; G. Thomas Hayman; Jennifer R. Smith; Victoria Petri; Timothy Lowry; Rajni Nigam; Melinda R. Dwinell; Elizabeth A. Worthey; Diane H. Munzenmaier; Mary Shimoyama; Howard J. Jacob (Database J. Biol. Databases Curation, 2013)

The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications. - Jennifer R. Smith; Carissa A. Park; Rajni Nigam; Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; Timothy Lowry; Victoria Petri; Jeff de Pons; Marek Tutaj; Weisong Liu; Elizabeth A. Worthey; et al. (J. Biomed. Semant., 2013)

BC4GO: a full-text corpus for the BioCreative IV GO task. - Kimberly Van Auken; Mary L. Schaeffer; Peter McQuilton; Stanley J. F. Laulederkind; Donghui Li; Shur-Jen Wang; G. Thomas Hayman; Susan Tweedie; Cecilia N. Arighi; James Done; Hans-Michael Müller; Paul W. Sternberg; et al. (Database J. Biol. Databases Curation, 2014)

Overview of the gene ontology task at BioCreative IV. - Yuqing Mao; Kimberly Van Auken; Donghui Li; Cecilia N. Arighi; Peter McQuilton; G. Thomas Hayman; Susan Tweedie; Mary L. Schaeffer; Stanley J. F. Laulederkind; Shur-Jen Wang; Julien Gobeill; Patrick Ruch; et al. (Database J. Biol. Databases Curation, 2014)

The pathway ontology - updates and applications. - Victoria Petri; Pushkala Jayaraman; Marek Tutaj; G. Thomas Hayman; Jennifer R. Smith; Jeff de Pons; Stanley J. F. Laulederkind; Timothy Lowry; Rajni Nigam; Shur-Jen Wang; Mary Shimoyama; Melinda R. Dwinell; et al. (J. Biomed. Semant., 2014)

OntoMate: a text-mining tool aiding curation at the Rat Genome Database. - Weisong Liu; Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; Rajni Nigam; Jennifer R. Smith; Jeff de Pons; Melinda R. Dwinell; Mary Shimoyama (Database J. Biol. Databases Curation, 2015)

PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease. - Shur-Jen Wang; Stanley J. F. Laulederkind; G. Thomas Hayman; Victoria Petri; Weisong Liu; Jennifer R. Smith; Rajni Nigam; Melinda R. Dwinell; Mary Shimoyama (Database J. Biol. Databases Curation, 2015)

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. - Mary Shimoyama; Jeff de Pons; G. Thomas Hayman; Stanley J. F. Laulederkind; Weisong Liu; Rajni Nigam; Victoria Petri; Jennifer R. Smith; Marek Tutaj; Shur-Jen Wang; Elizabeth A. Worthey; Melinda R. Dwinell; et al. (Nucleic Acids Res., 2015)

Disease Connections at RGD. - Mary Shimoyama; Stanley J. F. Laulederkind; Jeff de Pons; Marek Tutaj; Victoria Petri; G. Thomas Hayman; Shur-Jen Wang; Rajni Nigam; Jennifer R. Smith; Jyothi Thota; Omid Ghiasvand; Melinda R. Dwinell (AMIA, 2016)

The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database. - G. Thomas Hayman; Stanley J. F. Laulederkind; Jennifer R. Smith; Shur-Jen Wang; Victoria Petri; Rajni Nigam; Marek Tutaj; Jeff de Pons; Melinda R. Dwinell; Mary Shimoyama (Database J. Biol. Databases Curation, 2016)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

The Human Phenotype Ontology in 2017. - Sebastian Köhler 001; Nicole A. Vasilevsky; Mark Engelstad; Erin Foster; Julie A. McMurry; Ségolène Aymé; Gareth Baynam; Susan M. Bello; Cornelius F. Boerkoel; Kym M. Boycott; Michael Brudno; Orion J. Buske; et al. (Nucleic Acids Res., 2017)

Adapting Disease Vocabularies for Curation at the Rat Genome Database. - Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; Elizabeth R. Bolton; Jennifer R. Smith; Marek Tutaj; Jeff de Pons; Mary Shimoyama; Melinda R. Dwinell (ICBO, 2018)

Integrated curation and data mining for disease and phenotype models at the Rat Genome Database. - Shur-Jen Wang; Stanley J. F. Laulederkind; Yiqing Zhao; G. Thomas Hayman; Jennifer R. Smith; Monika Tutaj; Jyothi Thota; Marek Tutaj; Matthew J. Hoffman 003; Elizabeth R. Bolton; Jeffrey DePons; Melinda R. Dwinell; et al. (Database J. Biol. Databases Curation, 2019)

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. - Sebastian Köhler 001; Leigh Carmody; Nicole A. Vasilevsky; Julius O. B. Jacobsen; Daniel Danis; Jean-Philippe F. Gourdine; Michael A. Gargano; Nomi L. Harris; Nicolas Matentzoglu; Julie A. McMurry; David Osumi-Sutherland; Valentina Cipriani; et al. (Nucleic Acids Res., 2019)

Alliance of Genome Resources Portal: unified model organism research platform. - Julie Agapite; Laurent-Philippe Albou; Suzi A. Aleksander; Joanna Argasinska; Valerio Arnaboldi; Helen Attrill; Susan M. Bello; Judith A. Blake; Olin Blodgett; Yvonne M. Bradford; Carol J. Bult; Scott Cain; et al. (Nucleic Acids Res., 2020)

The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. - Jennifer R. Smith; G. Thomas Hayman; Shur-Jen Wang; Stanley J. F. Laulederkind; Matthew J. Hoffman 003; Mary L. Kaldunski; Monika Tutaj; Jyothi Thota; Harika S. Nalabolu; Santoshi L. R. Ellanki; Marek Tutaj; Jeffrey DePons; et al. (Nucleic Acids Res., 2020)

The Gene Ontology resource: enriching a GOld mine. - Seth Carbon; Eric Douglass; Benjamin M. Good; Deepak R. Unni; Nomi L. Harris; Christopher J. Mungall; Siddartha Basu; Rex L. Chisholm; Robert J. Dodson; Eric Hartline; Petra Fey; Paul D. Thomas; et al. (Nucleic Acids Res., 2021)

Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database. - Jennifer R. Smith; Marek A. Tutaj; Jyothi Thota; Logan Lamers; Adam C. Gibson; Akhilanand Kundurthi; Varun Reddy Gollapally; Kent C. Brodie; Stacy Zacher; Stanley J. F. Laulederkind; G. Thomas Hayman; Shur-Jen Wang; et al. (Database J. Biol. Databases Curation, 2025)