Reconstructing Tumor phylogenies from Heterogeneous Single-Cell Data. - Gregory Pennington; Charles A. Smith; Stanley Shackney; Russell Schwartz (J. Bioinform. Comput. Biol., 2007)

Network-Based Inference of Cancer Progression from Microarray Data. - Yongjin Park; Stanley Shackney; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Robust unmixing of tumor states in array comparative genomic hybridization data. - David Tolliver; Charalampos E. Tsourakakis; Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (Bioinform., 2010)

Applying unmixing to gene expression data for tumor phylogeny inference. - Russell Schwartz; Stanley Shackney (BMC Bioinform., 2010)

Inference of tumor phylogenies from genomic assays on heterogeneous samples. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (BCB, 2011)

Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (ISBRA, 2012)

Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations. - Salim Akhter Chowdhury; Stanley Shackney; Kerstin Heselmeyer-Haddad; Thomas Ried; Alejandro A. Schäffer; Russell Schwartz (Bioinform., 2013)

Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles. - Ayshwarya Subramanian; Stanley Shackney; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics. - Salim Akhter Chowdhury; Stanley E. Shackney; Kerstin Heselmeyer-Haddad; Thomas Ried; Alejandro A. Schäffer; Russell Schwartz (PLoS Comput. Biol., 2014)

Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study. - Daniele Catanzaro; Stanley E. Shackney; Alejandro A. Schäffer; Russell Schwartz (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)