Using tries for subset and superset queries. - Stas Bevc; Iztok Savnik (ITI, 2009)

ESPResSo++: A modern multiscale simulation package for soft matter systems. - Jonathan D. Halverson; Thomas Brandes; Olaf Lenz; Axel Arnold; Stas Bevc; Vitaliy Starchenko; Kurt Kremer; Torsten Stuehn; Dirk Reith (Comput. Phys. Commun., 2013)

STOCK: Structure mapper and online coarse-graining kit for molecular simulations. - Stas Bevc; Christoph Junghans; Matej Praprotnik (J. Comput. Chem., 2015)