A Novel Computerized Tool to Stratify Risk in Carotid Atherosclerosis Using Kinematic Features of the Arterial Wall. - Aimilia Gastounioti; Stavros Makrodimitris; Spyretta Golemati; Nikolaos P. E. Kadoglou; Christos D. Liapis; Konstantina S. Nikita (IEEE J. Biomed. Health Informatics, 2015)

Improving protein function prediction using protein sequence and GO-term similarities. - Stavros Makrodimitris; Roeland C. H. J. van Ham; Marcel J. T. Reinders (Bioinform., 2019)

Metric learning on expression data for gene function prediction. - Stavros Makrodimitris; Marcel J. T. Reinders; Roeland C. H. J. van Ham (Bioinform., 2020)

Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function. - Amelia Villegas-Morcillo; Stavros Makrodimitris; Roeland C. H. J. van Ham; Angel M. Gomez; Victoria E. Sánchez; Marcel J. T. Reinders (Bioinform., 2021)

An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics. - Stavros Makrodimitris; Bram Pronk; Tamim Abdelaal; Marcel J. T. Reinders (Briefings Bioinform., 2023)