Promoter2.0: for the recognition of PolII promoter sequences. - Steen Knudsen (Bioinform., 1999)

Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation. - Lars Juhl Jensen; Steen Knudsen (Bioinform., 2000)

Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays. - Henrik Bjørn Nielsen; Steen Knudsen (Bioinform., 2002)

Neural network predicts sequence of TP53 gene based on DNA chip. - Jeppe S. Spicker; Friedrik Wikman; Ming-Lan Lu; Carlos Cordon-Cardo; Christopher T. Workman; Torben F. Ørntoft; Søren Brunak; Steen Knudsen (Bioinform., 2002)

GenePublisher: automated analysis of DNA microarray data. - Steen Knudsen; Christopher T. Workman; Thomas Sicheritz-Pontén; Carsten Friis (Nucleic Acids Res., 2003)

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays. - Henrik Bjørn Nielsen; Rasmus Wernersson; Steen Knudsen (Nucleic Acids Res., 2003)

Alternative mapping of probes to genes for Affymetrix chips. - Laurent Gautier; Morten Møller; Lennart Friis-Hansen; Steen Knudsen (BMC Bioinform., 2004)

Implementation of a gene expression index calculation method based on the PDNN model. - Henrik Bjørn Nielsen; Laurent Gautier; Steen Knudsen (Bioinform., 2005)