Solving the Protein Threading Problem by Lagrangian Relaxation. - Stefan Balev (WABI, 2004)

Protein Threading: From Mathematical Models to Parallel Implementations. - Rumen Andonov; Stefan Balev; Nicola Yanev (INFORMS J. Comput., 2004)

Proteins: From Structural Classification to Amino Acid Interaction Networks. - Omar Gaci; Stefan Balev (BIOCOMP, 2008)

Lagrangian approaches for a class of matching problems in computational biology. - Nicola Yanev; Rumen Andonov; Philippe Veber; Stefan Balev (Comput. Math. Appl., 2008)

A dynamic programming based reduction procedure for the multidimensional 0-1 knapsack problem. - Stefan Balev; Nicola Yanev; Arnaud Fréville; Rumen Andonov (Eur. J. Oper. Res., 2008)

Hubs identification in amino acids interaction networks. - Omar Gaci; Stefan Balev (AICCSA, 2009)

The Small-World Model for Amino Acid Interaction Networks. - Omar Gaci; Stefan Balev (AINA Workshops, 2009)

Ant Colony Approach to Predict Amino Acid Interaction Networks. - Omar Gaci; Stefan Balev (NaBIC, 2009)

Modeling the Dynamics of Complex Interaction Systems: from Morphogenesis to Control. - Nathalie Corson; M. A. Aziz-Alaoui; Rawan Ghnemat; Stefan Balev; Cyrille Bertelle (Int. J. Bifurc. Chaos, 2012)

A Model of Road Network and Buildings Extension Co-evolution. - Merwan Achibet; Stefan Balev; Antoine Dutot; Damien Olivier (ANT/SEIT, 2014)

Morphogenesis of Complex Networks: A Reaction Diffusion Framework for Spatial Graphs. - Michele Tirico; Stefan Balev; Antoine Dutot; Damien Olivier (COMPLEX NETWORKS (1), 2018)

Cops and Robbers on Dynamic Graphs: Offline and Online Case. - Stefan Balev; Juan Luis Jiménez Laredo; Ioannis Lamprou 001; Yoann Pigné; Eric Sanlaville (Discret. Math. Theor. Comput. Sci., 2023)

Brief Announcement: The Dynamic Steiner Tree Problem: Definitions, Complexity, Algorithms. - Stefan Balev; Yoann Pigné; Eric Sanlaville; Mathilde Vernet (SAND, 2024)

Temporally connected components. - Stefan Balev; Eric Sanlaville; Jason Schoeters (Theor. Comput. Sci., 2024)

Brief Announcement: The Shortest Temporal Exploration Problem. - Stefan Balev; Eric Sanlaville; Antoine Toullalan (SAND, 2025)