PLUG: An Agent Based Prototype Validation of CAD-Constructions. - Stefan Baumgart; Begona Toledo; Karin Spors; Manfred Schimmler (IKE, 2006)

A Massively Parallel Architecture for Bioinformatics. - Gerd Pfeiffer; Stefan Baumgart; Jan Schröder; Manfred Schimmler (ICCS (1), 2009)

Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics. - Lars Wienbrandt; Stefan Baumgart; Jost Bissel; Carol May Yen Yeo; Manfred Schimmler (ICCS, 2010)

Massively parallel FPGA-based implementation of BLASTp with the two-hit method. - Lars Wienbrandt; Stefan Baumgart; Jost Bissel; Florian Schatz; Manfred Schimmler (ICCS, 2011)