Hydrogen placement in protein-ligand complexes under consideration of tautomerism. - Stefan Bietz; Sascha Urbaczek; Matthias Rarey (J. Cheminformatics, 2011)

Protoss: a holistic approach to predict tautomers and protonation states in protein-ligand complexes. - Stefan Bietz; Sascha Urbaczek; Benjamin Schulz; Matthias Rarey (J. Cheminformatics, 2014)

Facing the Challenges of Structure-Based Target Prediction by Inverse Virtual Screening. - Karen Schomburg; Stefan Bietz; Hans Briem; Angela M. Henzler; Sascha Urbaczek; Matthias Rarey (J. Chem. Inf. Model., 2014)

ASCONA: Rapid Detection and Alignment of Protein Binding Site Conformations. - Stefan Bietz; Matthias Rarey (J. Chem. Inf. Model., 2015)

Discriminative Chemical Patterns: Automatic and Interactive Design. - Stefan Bietz; Karen T. Schomburg; Matthias Hilbig 001; Matthias Rarey (J. Chem. Inf. Model., 2015)

mRAISE: an alternative algorithmic approach to ligand-based virtual screening. - Mathias M. von Behren; Stefan Bietz; Eva Nittinger; Matthias Rarey (J. Comput. Aided Mol. Des., 2016)

SIENA: Efficient Compilation of Selective Protein Binding Site Ensembles. - Stefan Bietz; Matthias Rarey (J. Chem. Inf. Model., 2016)

UNICON: A Powerful and Easy-to-Use Compound Library Converter. - Kai Sommer; Nils-Ole Friedrich; Stefan Bietz; Matthias Hilbig 001; Therese Inhester; Matthias Rarey (J. Chem. Inf. Model., 2016)

Methoden zur computergestützten Generierung und Aufbereitung von Strukturensembles für Proteinbindetaschen. - Stefan Bietz (2016)

Index-Based Searching of Interaction Patterns in Large Collections of Protein-Ligand Interfaces. - Therese Inhester; Stefan Bietz; Matthias Hilbig 001; Robert Schmidt 002; Matthias Rarey (J. Chem. Inf. Model., 2017)

ProteinsPlus: a web portal for structure analysis of macromolecules. - Rainer Fährrolfes; Stefan Bietz; Florian Flachsenberg; Agnes Meyder; Eva Nittinger; Thomas Otto; Andrea Volkamer; Matthias Rarey (Nucleic Acids Res., 2017)

NAOMInova: Interactive Geometric Analysis of Noncovalent Interactions in Macromolecular Structures. - Therese Inhester; Eva Nittinger; Kai Sommer; Pascal Schmidt; Stefan Bietz; Matthias Rarey (J. Chem. Inf. Model., 2017)

Placement of Water Molecules in Protein Structures: From Large-Scale Evaluations to Single-Case Examples. - Eva Nittinger; Florian Flachsenberg; Stefan Bietz; Gudrun Lange; Robert Klein; Matthias Rarey (J. Chem. Inf. Model., 2018)