pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks. - Stefan Budach; Annalisa Marsico (Bioinform., 2018)

Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading. - René Rahn; Stefan Budach; Pascal Costanza; Marcel Ehrhardt; Jonny Hancox; Knut Reinert (Bioinform., 2018)

Graph Convolutional Networks Improve the Prediction of Cancer Driver Genes. - Roman Schulte-Sasse; Stefan Budach; Denes Hnisz; Annalisa Marsico (ICANN (Workshop), 2019)

Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms. - Roman Schulte-Sasse; Stefan Budach; Denes Hnisz; Annalisa Marsico (Nat. Mach. Intell., 2021)