Spatio-Temporal Learning from Longitudinal Data for Multiple Sclerosis Lesion Segmentation. - Stefan Denner; Ashkan Khakzar; Moiz Sajid; Mahdi Saleh; Ziga Spiclin; Seong-Tae Kim 001; Nassir Navab (BrainLes@MICCAI (1), 2020)

Autoencoders for unsupervised anomaly segmentation in brain MR images: A comparative study. - Christoph Baur; Stefan Denner; Benedikt Wiestler; Nassir Navab; Shadi Albarqouni (Medical Image Anal., 2021)

Efficient Large Scale Medical Image Dataset Preparation for Machine Learning Applications. - Stefan Denner; Jonas Scherer; Klaus Kades; Dimitrios Bounias; Philipp Schader; Lisa Kausch; Markus Bujotzek; Andreas Michael Bucher; Tobias Penzkofer; Klaus H. Maier-Hein (DEMI@MICCAI, 2023)

Abstract: Deep Learning-based Detection of Vessel Occlusions on CT-Angiography in Patients with Suspected Acute Ischemic Stroke. - Gianluca Brugnara; Michael Baumgartner 001; Edwin D. Scholze; Katerina Deike-Hofmann; Klaus Kades; Jonas Scherer; Stefan Denner; Hagen Meredig; Aditya Rastogi; Mustafa A. Mahmutoglu; Christian Ulfert; Ulf Neuberger; et al. (Bildverarbeitung für die Medizin, 2024)

Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting. - Maximilian Rokuss; Yannick Kirchhoff; Saikat Roy; Balint Kovacs; Constantin Ulrich; Tassilo Wald; Maximilian Zenk; Stefan Denner; Fabian Isensee; Philipp Vollmuth; Jens Kleesiek; Klaus H. Maier-Hein (LDTM/MMMI/ML4MHD/ML-CDS@MICCAI, 2024)

Decoupling Semantic Similarity from Spatial Alignment for Neural Networks. - Tassilo Wald; Constantin Ulrich; Priyank Jaini; Gregor Köhler; David Zimmerer; Stefan Denner; Fabian Isensee; Michael Baumgartner 001; Klaus H. Maier-Hein (NeurIPS, 2024)

Leveraging Foundation Models for Content-Based Medical Image Retrieval in Radiology. - Stefan Denner; David Zimmerer; Dimitrios Bounias; Markus Bujotzek; Shuhan Xiao; Lisa Kausch; Philipp Schader; Tobias Penzkofer; Paul F. Jäger; Klaus H. Maier-Hein (CoRR, 2024)

Embarrassingly Simple Scribble Supervision for 3D Medical Segmentation. - Karol Gotkowski; Carsten T. Lüth; Paul F. Jäger; Sebastian Ziegler; Lars Krämer; Stefan Denner; Shuhan Xiao; Nico Disch; Klaus H. Maier-Hein; Fabian Isensee (CoRR, 2024)

Automatic classification of prostate MR series type using image content and metadata. - Deepa Krishnaswamy; Balint Kovacs; Stefan Denner; Steven D. Pieper; David A. Clunie; Christopher P. Bridge; Tina Kapur; Klaus H. Maier-Hein; Andrey Fedorov (CoRR, 2024)

Visual Prompt Engineering for Medical Vision Language Models in Radiology. - Stefan Denner; Markus Bujotzek; Dimitrios Bounias; David Zimmerer; Raphael Stock; Paul F. Jäger; Klaus H. Maier-Hein (CoRR, 2024)

Abstract: Real-world Federated Learning in Radiology - Hurdles to Overcome and Benefits to Gain. - Markus Bujotzek; Ünal Akünal; Stefan Denner; Peter Neher; Maximilian Zenk; Klaus H. Maier-Hein; Andreas Bucher; Rickmer Braren (Bildverarbeitung für die Medizin, 2025)

Abstract: Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting. - Maximilian Rokuss; Yannick Kirchhoff; Saikat Roy; Balint Kovacs; Constantin Ulrich; Tassilo Wald; Maximilian Zenk; Stefan Denner; Fabian Isensee; Philipp Vollmuth; Jens Kleesiek; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2025)

Leveraging foundation models for content-based image retrieval in radiology. - Stefan Denner; David Zimmerer; Dimitrios Bounias; Markus Bujotzek; Shuhan Xiao; Raphael Stock; Lisa Kausch; Philipp Schader; Tobias Penzkofer; Paul F. Jäger; Klaus H. Maier-Hein (Comput. Biol. Medicine, 2025)

Real-world federated learning in radiology: hurdles to overcome and benefits to gain. - Markus R. Bujotzek; Ünal Akünal; Stefan Denner; Peter Neher; Maximilian Zenk; Eric Frodl; Astha Jaiswal; Moon S. Kim 002; Nicolai R. Krekiehn; Manuel Nickel; Richard Ruppel; Marcus Both; et al. (J. Am. Medical Informatics Assoc., 2025)

nnLandmark: A Self-Configuring Method for 3D Medical Landmark Detection. - Alexandra Ertl; Shuhan Xiao; Stefan Denner; Robin Peretzke; David Zimmerer; Peter Neher; Fabian Isensee; Klaus H. Maier-Hein (CoRR, 2025)

Automated Ensemble Multimodal Machine Learning for Healthcare. - Fergus Imrie; Stefan Denner; Lucas S. Brunschwig; Klaus H. Maier-Hein; Mihaela van der Schaar (IEEE J. Biomed. Health Informatics, 2025)