Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions. - Stefan E. Seemann; Andreas S. Richter; Jan Gorodkin; Rolf Backofen (Algorithms Mol. Biol., 2010)

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. - Stefan E. Seemann; Andreas S. Richter; Tanja Gesell; Rolf Backofen; Jan Gorodkin (Bioinform., 2011)

The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. - Stefan E. Seemann; Peter Menzel; Rolf Backofen; Jan Gorodkin (Nucleic Acids Res., 2011)

RILogo: visualizing RNA-RNA interactions. - Peter Menzel; Stefan E. Seemann; Jan Gorodkin (Bioinform., 2012)

The RNAsnp web server: predicting SNP effects on local RNA secondary structure. - Radhakrishnan Sabarinathan; Hakim Tafer; Stefan E. Seemann; Ivo L. Hofacker; Peter F. Stadler; Jan Gorodkin (Nucleic Acids Res., 2013)

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs. - Milad Miladi; Alexander Junge; Fabrizio Costa; Stefan E. Seemann; Jakob Hull Havgaard; Jan Gorodkin; Rolf Backofen (Bioinform., 2017)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)

Patent data-driven analysis of literature associations with changing innovation trends. - Adrian Sven Geissler; Jan Gorodkin; Stefan E. Seemann (Frontiers Res. Metrics Anal., 2024)