Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics Research. - Ana Conesa; Stefan Götz 003; Juan Miguel García-Gómez; Montserrat Robles; Manuel Talón (Spanish Bioinformatics Conference, 2004)

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. - Ana Conesa; Stefan Götz 003; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles (Bioinform., 2005)

Blast2GO goes Grid: Developing a Grid-Enabled Prototype for Functional Genomics Analysis. - Gabriel Aparício; Stefan Götz 003; Ana Conesa; Damià Segrelles; Ignacio Blanquer; Juan Miguel García; Vicente Hernández; Montserrat Robles; Manuel Talón (HealthGrid, 2006)

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. - Fátima Al-Shahrour; José Carbonell; Pablo Minguez; Stefan Götz 003; Ana Conesa; Joaquín Tárraga; Ignacio Medina; Eva Alloza; David Montaner; Joaquín Dopazo (Nucleic Acids Res., 2008)

GEPAS, a web-based tool for microarray data analysis and interpretation. - Joaquín Tárraga; Ignacio Medina; José Carbonell; Jaime Huerta-Cepas; Pablo Minguez; Eva Alloza; Fátima Al-Shahrour; Susana Vegas-Azcárate; Stefan Götz 003; Pablo Escobar; Francisco García-García 002; Ana Conesa; et al. (Nucleic Acids Res., 2008)

SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. - Pablo Minguez; Stefan Götz 003; David Montaner; Fátima Al-Shahrour; Joaquín Dopazo (Nucleic Acids Res., 2009)

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. - Ignacio Medina; José Carbonell; Luis Pulido; Sara C. Madeira; Stefan Götz 003; Ana Conesa; Joaquín Tárraga; Alberto D. Pascual-Montano; Rubén Nogales-Cadenas; Javier Santoyo; Francisco García-García 002; Martina Marbà; et al. (Nucleic Acids Res., 2010)

SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. - Thomas Rattei; Patrick Tischler; Stefan Götz 003; Marc-André Jehl; Jonathan Hoser; Roland Arnold; Ana Conesa; Hans-Werner Mewes (Nucleic Acids Res., 2010)

B2G-FAR, a species-centered GO annotation repository. - Stefan Götz 003; Roland Arnold; Patricia Sebastián-León; Samuel Martín-Rodríguez; Patrick Tischler; Marc-André Jehl; Joaquín Dopazo; Thomas Rattei; Ana Conesa (Bioinform., 2011)

Qualimap: evaluating next-generation sequencing alignment data. - Fernando García-Alcalde; Konstantin Okonechnikov; José Carbonell; Luis M. Cruz; Stefan Götz 003; Sonia Tarazona; Joaquín Dopazo; Thomas F. Meyer; Ana Conesa (Bioinform., 2012)

Pathway network inference from gene expression data. - Ignacio Ponzoni; María José Nueda; Sonia Tarazona; Stefan Götz 003; David Montaner; Julieta Sol Dussaut; Joaquín Dopazo; Ana Conesa (BMC Syst. Biol., 2014)

CMK: Enhancing Resource Usage Monitoring across Diverse Bioinformatics Workflow Management Systems. - Robert Nica; Stefan Götz 003; Germán Moltó (J. Grid Comput., 2024)