Active medulloblastoma enhancers reveal subgroup-specific cellular origins. - Charles Y. Lin; Serap Erkek; Yiai Tong; Linlin Yin; Alexander J. Federation; Marc Zapatka; Parthiv Haldipur; Daisuke Kawauchi; Thomas Risch; Hans-Jörg Warnatz; Barbara C. Worst; Bensheng Ju; et al. (Nat., 2016)

DNA methylation-based classification of central nervous system tumours. - David Capper; David T. W. Jones; Martin Sill; Volker Hovestadt; Daniel Schrimpf; Dominik Sturm; Christian Koelsche; Felix Sahm; Lukas Chavez; David E. Reuss; Annekathrin Kratz; Annika K. Wefers; et al. (Nat., 2018)

TelomereHunter - in silico estimation of telomere content and composition from cancer genomes. - Lars Feuerbach; Lina Sieverling; Katharina I. Deeg; Philip Ginsbach; Barbara Hutter; Ivo Buchhalter; Paul A. Northcott; Sadaf S. Mughal; Priya Chudasama; Hanno Glimm; Claudia Scholl; Peter Lichter; et al. (BMC Bioinform., 2019)

RF_Purify: a novel tool for comprehensive analysis of tumor-purity in methylation array data based on random forest regression. - Pascal David Johann; Natalie Jäger; Stefan M. Pfister; Martin Sill (BMC Bioinform., 2019)

Resolving medulloblastoma cellular architecture by single-cell genomics. - Volker Hovestadt; Kyle S. Smith; Laure Bihannic; Mariella G. Filbin; McKenzie L. Shaw; Alicia Baumgartner; John C. DeWitt; Andrew Groves; Lisa Mayr; Hannah R. Weisman; Alyssa R. Richman; Marni E. Shore; et al. (Nat., 2019)

InTAD: chromosome conformation guided analysis of enhancer target genes. - Konstantin Okonechnikov; Serap Erkek; Jan O. Korbel; Stefan M. Pfister; Lukas Chavez (BMC Bioinform., 2019)

Revana: a comprehensive tool for regulatory variant analysis and visualization of cancer genomes. - Elias Ulrich; Stefan M. Pfister; Natalie Jäger (Bioinform., 2023)