Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings. - Stefan Mautner; Rolf Backofen; Fabrizio Costa (ESANN, 2019)

ShaKer: RNA SHAPE prediction using graph kernel. - Stefan Mautner; Soheila Montaseri; Milad Miladi; Martin Raden; Fabrizio Costa; Rolf Backofen (Bioinform., 2019)

The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment. - Martin Raden; Teresa Müller; Stefan Mautner; Rick Gelhausen; Rolf Backofen (BMC Bioinform., 2020)

Learning to generate feasible graphs using graph grammars. - Stefan Mautner; Rolf Backofen; Fabrizio Costa (CoRR, 2025)