Rapid binding site analysis by means of structural interaction fingerprint patterns - an implication to GPCR-targeted CADD. - Tomasz Kosciólek; Stefan Mordalski; Andrzej J. Bojarski (J. Cheminformatics, 2011)

Homology modelling of metabotropic glutamate receptor 2. - Stefan Mordalski; Tomasz Kosciólek; Aina Westrheim Ravna; Ingebrigt Sylte; Andrzej J. Bojarski (J. Cheminformatics, 2011)

The importance of template choice in homology modeling. A 5-HT6R case study. - Krzysztof Rataj; Jagna Witek; Stefan Mordalski; Tomasz Kosciólek; Andrzej J. Bojarski (J. Cheminformatics, 2013)

Application of Structural Interaction Fingerpints (SIFts) into post-docking analysis - insight into activity and selectivity. - Jagna Witek; Krzysztof Rataj; Stefan Mordalski; Sabina Smusz; Tomasz Kosciólek; Andrzej J. Bojarski (J. Cheminformatics, 2013)

Impact of Template Choice on Homology Model Efficiency in Virtual Screening. - Krzysztof Rataj; Jagna Witek; Stefan Mordalski; Tomasz Kosciólek; Andrzej J. Bojarski (J. Chem. Inf. Model., 2014)

Multiple conformational states in retrospective virtual screening - homology models vs. crystal structures: beta-2 adrenergic receptor case study. - Stefan Mordalski; Jagna Witek; Sabina Smusz; Krzysztof Rataj; Andrzej J. Bojarski (J. Cheminformatics, 2015)

Multi-Step Protocol for Automatic Evaluation of Docking Results Based on Machine Learning Methods - A Case Study of Serotonin Receptors 5-HT6 and 5-HT7. - Sabina Smusz; Stefan Mordalski; Jagna Witek; Krzysztof Rataj; Rafal Kafel; Andrzej J. Bojarski (J. Chem. Inf. Model., 2015)

GPCRdb: an information system for G protein-coupled receptors. - Vignir Ísberg; Stefan Mordalski; Christian Munk; Krzysztof Rataj; Kasper Harpsøe; Alexander S. Hauser; Bas Vroling; Andrzej J. Bojarski; Gert Vriend; David E. Gloriam (Nucleic Acids Res., 2016)

From Homology Models to a Set of Predictive Binding Pockets-a 5-HT1A Receptor Case Study. - Dawid Warszycki; Manuel Rueda; Stefan Mordalski; Kurt Kristiansen; Grzegorz Satala; Krzysztof Rataj; Zdzislaw Chilmonczyk; Ingebrigt Sylte; Ruben Abagyan; Andrzej J. Bojarski (J. Chem. Inf. Model., 2017)

GPCRdb in 2018: adding GPCR structure models and ligands. - Gáspár Pándy-Szekeres; Christian Munk; Tsonko M. Tsonkov; Stefan Mordalski; Kasper Harpsøe; Alexander S. Hauser; Andrzej J. Bojarski; David E. Gloriam (Nucleic Acids Res., 2018)

Emulating Docking Results Using a Deep Neural Network: A New Perspective for Virtual Screening. - Stanislaw Jastrzebski; Maciej Szymczak; Agnieszka Pocha; Stefan Mordalski; Jacek Tabor; Andrzej J. Bojarski; Sabina Podlewska (J. Chem. Inf. Model., 2020)

2D SIFt: a matrix of ligand-receptor interactions. - Stefan Mordalski; Agnieszka Wojtuch; Igor T. Podolak; Rafal Kurczab; Andrzej J. Bojarski (J. Cheminformatics, 2021)

GPCRdb in 2021: integrating GPCR sequence, structure and function. - Albert J. Kooistra; Stefan Mordalski; Gáspár Pándy-Szekeres; Mauricio Esguerra; Alibek Mamyrbekov; Christian Munk; György M. Keserü; David E. Gloriam (Nucleic Acids Res., 2021)