RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads. - Stefan Niebler; André Müller; Thomas Hankeln; Bertil Schmidt (BMC Bioinform., 2020)

RNACache: Fast Mapping of RNA-Seq Reads to Transcriptomes Using MinHashing. - Julian Cascitti; Stefan Niebler; André Müller; Bertil Schmidt (ICCS (1), 2021)

RNACache: A scalable approach to rapid transcriptomic read mapping using locality sensitive hashing. - Julian Cascitti; Stefan Niebler; André Müller; Bertil Schmidt (J. Comput. Sci., 2022)

Automated Identification and Location of Three Dimensional Atmospheric Frontal Systems. - Stefan Niebler; Bertil Schmidt; Holger Tost; Peter Spichtinger (ICCS (2), 2023)

Scalable GPU-Enabled Creation of Three Dimensional Weather Fronts. - Stefan Niebler; Bertil Schmidt; Peter Spichtinger; Holger Tost (PASC, 2024)