MACAT - microarray chromosome analysis tool. - Joern Toedling; Sebastian Schmeier; Matthias Heinig; Benjamin Georgi; Stefan Roepcke (Bioinform., 2005)

SVC: structured visualization of evolutionary sequence conservation. - Stefan Roepcke; Petko Fiziev; P. H. Seeburg; Martin Vingron (Nucleic Acids Res., 2005)

T-Reg Comparator: an analysis tool for the comparison of position weight matrices. - Stefan Roepcke; Steffen Grossmann; Sven Rahmann; Martin Vingron (Nucleic Acids Res., 2005)

Inferring differentiation pathways from gene expression. - Ivan G. Costa; Stefan Roepcke; Christoph Hafemeister; Alexander Schliep (ISMB, 2008)