Use of convex analysis for the modelling of biochemical reaction systems. - Stefan Schuster; Thomas Höfer; Claus C. Hilgetag; Ronny Schuster (System Modelling and Optimization, 1993)

Refined algorithm and computer program for calculating all non-negative fluxes admissible in steady states of biochemical reaction systems with or without some flux rates fixed. - Ronny Schuster; Stefan Schuster (Comput. Appl. Biosci., 1993)

Pathway alignment: Application in the comparative analysis of glycolysis. - Thomas Dandekar; Stefan Schuster; Martijn A. Huynen; Peer Bork (German Conference on Bioinformatics, 1998)

A structural approach to the analysis of metabolic networks illustrated with erythrocyte metabolism. - Ignacio Sánchez-Valdenebro; Thomas Pfeiffer 004; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (German Conference on Bioinformatics, 1998)

Knowledge Representation and Graph Transformation. - Stefan Schuster (TAGT, 1998)

Simulation and analysis of metabolic networks by time-dependent Petri nets. - Ina Koch; Stefan Schuster; Monika Heiner (German Conference on Bioinformatics, 1999)

Analyzing Large enzymatic reaction networks. - Thomas Pfeiffer 004; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (German Conference on Bioinformatics, 1999)

METATOOL: for studying metabolic networks. - Thomas Pfeiffer 004; Ignacio Sánchez-Valdenebro; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (Bioinform., 1999)

Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. - Stefan Schuster; Thomas Pfeiffer 004; Ferdinand Moldenhauer; Ina Koch; Thomas Dandekar (German Conference on Bioinformatics, 2000)

Pathway Analysis of Metabolic Networks: New version of METATOOL and convenient classification of metabolites. - Ferdinand Moldenhauer; Ionela Zevedei-Oancea; Stefan Schuster (German Conference on Bioinformatics, 2001)

Treatment of multifunctional enzymesin metabolic pathway analysis. - Ionela Zevedei-Oancea; Stefan Schuster (German Conference on Bioinformatics, 2001)

Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. - Stefan Schuster; Thomas Pfeiffer 004; Ferdinand Moldenhauer; Ina Koch; Thomas Dandekar (Bioinform., 2002)

Making predictions about robustness and flexibility from metabolic network structure. - Stefan Schuster; Steffen Klamt; Jörg Stelling (German Conference on Bioinformatics, 2003)

Topological analysis of metabolic networks based on Petri net theory. - Ionela Zevedei-Oancea; Stefan Schuster (Silico Biol., 2003)

Exchange of Business Process Models Using the POP* Meta-model. - Reyes Grangel; Ricardo Chalmeta; Stefan Schuster; Iñaki Peña (Business Process Management Workshops, 2005)

YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. - Roland Schwarz 002; Patrick Musch; Axel von Kamp; Bernd Engels; R. Heiner Schirmer; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2005)

A theoretical framework for detecting signal transfer routes in signalling networks. - Ionela Zevedei-Oancea; Stefan Schuster (Comput. Chem. Eng., 2005)

Phase estimation mean square error and threshold effects for windowed and amplitude modulated sinusoidal signals. - Stefan Schuster; Stefan Scheiblhofer; Reinhard Feger; Andreas Stelzer (EUSIPCO, 2006)

Effects of motion models and sensor data on the accuracy of the LPM positioning system. - Klaus Pourvoyeur; Andreas Stelzer; Thomas Gahleitner; Stefan Schuster; Gerald Gassenbauer (FUSION, 2006)

Metatool 5.0: fast and flexible elementary modes analysis. - Axel von Kamp; Stefan Schuster (Bioinform., 2006)

Parameter estimation for sinusoidal signals with deterministic amplitude modulation. - Stefan Schuster; Stefan Scheiblhofer; Andreas Stelzer (EUSIPCO, 2007)

MDSOA for Achieving Interoperability. - Xabier Larrucea; Gorka Benguria; Stefan Schuster (ICCBSS, 2007)

The Landscape of Service-Oriented Systems: A Research Perspective. - Kostas Kontogiannis; Grace A. Lewis; Dennis B. Smith; Marin Litoiu; Hausi A. Müller; Stefan Schuster; Eleni Stroulia (SDSOA@ICSE, 2007)

SDSOA 2007: International Workshop on Systems Development in SOA Environments. - Kostas Kontogiannis; Grace A. Lewis; Dennis B. Smith; Marin Litoiu; Stefan Schuster (ICSE Companion, 2007)

Integrated network reconstruction, visualization and analysis using YANAsquare. - Roland Schwarz 002; Chunguang Liang; Christoph Kaleta; Mark Kühnel; Eik Hoffmann; Sergei Kuznetsov; Michael Hecker; Gareth Griffiths 003; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2007)

TassDB: a database of alternative tandem splice sites. - Michael Hiller; Swetlana Nikolajewa; Klaus Huse; Karol Szafranski; Philip Rosenstiel; Stefan Schuster; Rolf Backofen; Matthias Platzer (Nucleic Acids Res., 2007)

Accurate parameter estimation for amplitude modulated sinusoidal signals incorporating smoothness constraints. - Stefan Schuster; Reinhard Feger; Stefan Scheiblhofer; Andreas Stelzer (EUSIPCO, 2008)

Ramp sequence analysis to resolve multi target scenarios for a 77-GHz FMCW radar sensor. - Klaus Pourvoyeur; Reinhard Feger; Stefan Schuster; Andreas Stelzer; Linus Maurer (FUSION, 2008)

Tutorial 4: Adopting SOA. - Igor Santos; Leire Bastida Merino; Stefan Schuster (ICCBSS, 2008)

On Computing Solutions of Linear Diophantine Equations with One Non-linear Parameter. - Armin Größlinger; Stefan Schuster (SYNASC, 2008)

Can single knockouts accurately single out gene functions? - David Deutscher; Isaac Meilijson; Stefan Schuster; Eytan Ruppin (BMC Syst. Biol., 2008)

Equality of average and steady-state levels in some nonlinear models of biological oscillations. - Beate Knoke; Marko Marhl; Matjaz Perc; Stefan Schuster (Theory Biosci., 2008)

Computing Elementary Flux Modes in Genome-scale Metabolic Networks. - Christoph Kaleta; Luis F. de Figueiredo; Jörn Behre; Stefan Schuster (GCB, 2009)

Modelling Signalling Networks with Incomplete Information about Protein Activation States: A P System Framework of the KaiABC Oscillator. - Thomas Hinze; Thorsten Lenser; Gabi Escuela; Ines Heiland; Stefan Schuster (Workshop on Membrane Computing, 2009)

Computing the shortest elementary flux modes in genome-scale metabolic networks. - Luis F. de Figueiredo; Adam Podhorski; Angel Rubio; Christoph Kaleta; John E. Beasley; Stefan Schuster; Francisco J. Planes (Bioinform., 2009)

Can sugars be produced from fatty acids? A test case for pathway analysis tools. - Luis F. de Figueiredo; Stefan Schuster; Christoph Kaleta; David A. Fell (Bioinform., 2009)

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. - Luis F. de Figueiredo; Stefan Schuster; Christoph Kaleta; David A. Fell (Bioinform., 2009)

Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. - Jeanice Kielbassa; Ralf H. Bortfeldt; Stefan Schuster; Ina Koch (Comput. Biol. Chem., 2009)

Modeling Signal Transduction in Enzyme Cascades with the Concept of Elementary Flux Modes. - Jörn Behre; Stefan Schuster (J. Comput. Biol., 2009)

The Influence of Windowing on Bias and Variance of DFT-Based Frequency and Phase Estimation. - Stefan Schuster; Stefan Scheiblhofer; Andreas Stelzer (IEEE Trans. Instrum. Meas., 2009)

Modelling Modified Atmosphere Packaging for Fruits and Vegetables using Membrane Systems. - Gabi Escuela; Thomas Hinze; Peter Dittrich; Stefan Schuster; Mario Moreno-Álvarez (BIOSIGNALS, 2010)

Batman - The Dark Knight: A Game Theoretical Approach. - Sabine Hummert; Stefan Schuster; Christian Hummert (FCS, 2010)

CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks. - Katrin Bohl; Luis F. de Figueiredo; Oliver Hädicke; Steffen Klamt; Christian Kost; Stefan Schuster; Christoph Kaleta (GCB, 2010)

Modelling the optimal timing in metabolic pathway activation - Use of Pontryagin's Maximum Principle and role of the Golden section. - Martin Bartl; Pu Li 001; Stefan Schuster (Biosyst., 2010)

TassDB2 - A comprehensive database of subtle alternative splicing events. - Rileen Sinha; Thorsten Lenser; Niels Jahn; Ulrike Gausmann; Swetlana Friedel; Karol Szafranski; Klaus Huse; Philip Rosenstiel; Jochen Hampe; Stefan Schuster; Michael Hiller; Rolf Backofen; et al. (BMC Bioinform., 2010)

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. - Christoph Kaleta; Anna-Katharina Göhler; Stefan Schuster; Knut Jahreis; Reinhard Guthke; Swetlana Nikolajewa (BMC Syst. Biol., 2010)

Exhaustive Analysis of the Modular Structure of the Spliceosomal Assembly Network: A Petri Net Approach. - Ralf H. Bortfeldt; Stefan Schuster; Ina Koch (Silico Biol., 2010)

Jensen's inequality as a tool for explaining the effect of oscillations on the average cytosolic calcium concentration. - Beate Knoke; Christian Bodenstein; Marko Marhl; Matjaz Perc; Stefan Schuster (Theory Biosci., 2010)

Synchronisation of Biological Clock Signals - Capturing Coupled Repressilators from a Control Systems Perspective. - Thomas Hinze; Mathias Schumann; Stefan Schuster (BIOSIGNALS, 2011)

Sparse algorithms and bounds for statistically and computationally efficient robust estimation. - Stefan Schuster (EUSIPCO, 2011)

Chemical Analog Computers for Clock Frequency Control Based on P Modules. - Thomas Hinze; Christian Bodenstein; Benedict Schau; Ines Heiland; Stefan Schuster (Int. Conf. on Membrane Computing, 2011)

Exploring metabolic pathways in genome-scale networks via generating flux modes. - Alberto Rezola; Luis F. de Figueiredo; Matthias Brock; Jon Pey; Adam Podhorski; Christoph Wittmann; Stefan Schuster; Alexander Bockmayr; Francisco J. Planes (Bioinform., 2011)

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis. - Christoph Kaleta; Luis F. de Figueiredo; Ines Heiland; Steffen Klamt; Stefan Schuster (Biosyst., 2011)

Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach. - Stefan Schuster; Luis F. de Figueiredo; Anja Schröter; Christoph Kaleta (Biosyst., 2011)

More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli. - Anna-Katharina Göhler; Öznur Kökpinar; Wolfgang Schmidt-Heck; Robert Geffers; Reinhard Guthke; Ursula Rinas; Stefan Schuster; Knut Jahreis; Christoph Kaleta (BMC Syst. Biol., 2011)

Biochemical Frequency Control by Synchronisation of Coupled Repressilators: An In Silico Study of Modules for Circadian Clock Systems. - Thomas Hinze; Mathias Schumann; Christian Bodenstein; Ines Heiland; Stefan Schuster (Comput. Intell. Neurosci., 2011)

Capturing Biological Frequency Control of Circadian Clocks by Reaction System Modularization. - Thomas Hinze; Christian Bodenstein; Ines Heiland; Stefan Schuster (ERCIM News, 2011)

In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans. - Christoph Kaleta; Luis F. de Figueiredo; Sarah Werner; Reinhard Guthke; Michael Ristow; Stefan Schuster (PLoS Comput. Biol., 2011)

Accessibility considerations in designing a layperson's application for score music description. - Julian Rubisch; Jakob Doppler; Stefan Schuster; Hannes Raffaseder (Audio Mostly Conference, 2012)

Assessing the Readiness to Move into the Cloud. - Leire Orue-Echevarria; Juncal Alonso; Marisa Escalante; Stefan Schuster (CloudComp, 2012)

Semantic Movie Scene Annotation for Rapid Prototyping of Score Music. - Julian Rubisch; Jakob Doppler; Stefan Schuster; Hannes Raffaseder (ICMC, 2012)

Modeling the Seasonal Adaptation of Circadian Clocks by Changes in the Network Structure of the Suprachiasmatic Nucleus. - Christian Bodenstein; Marko Gosak; Stefan Schuster; Marko Marhl; Matjaz Perc (PLoS Comput. Biol., 2012)

Estimating Photo-Voltaic Power Supply without Smart Metering Infrastructure. - Michael Till Beck; Hermann de Meer; Stefan Schuster; Martin Kreuzer (E2DC, 2013)

Accuracy limits of a seam-tracking algorithm for microwave systems at mm-wave frequencies. - Jochen O. Schrattenecker; Stefan Schuster; Andreas Haderer; Guenther Reinthaler; Andreas Stelzer (EUSIPCO, 2013)

Demand Response by Decentralized Device Control Based on Voltage Level. - Wilfried Elmenreich; Stefan Schuster (IWSOS, 2013)

Selection of human tissue-specific elementary flux modes using gene expression data. - Alberto Rezola; Jon Pey; Luis F. de Figueiredo; Adam Podhorski; Stefan Schuster; Angel Rubio; Francisco J. Planes (Bioinform., 2013)

Alternative splicing of mutually exclusive exons - A review. - Martin Pohl; Ralf H. Bortfeldt; Konrad Grützmann; Stefan Schuster (Biosyst., 2013)

Optimized Parameter Estimation for the LPM Local Positioning System. - Reimar Pfeil; Stefan Schuster; Andreas Stelzer (IEEE Trans. Instrum. Meas., 2013)

Bias and Variance in Frequency Estimation at the Leading Edge of a Peak in the Spectrum of a Windowed Signal Under Multipath Mitigation. - Thomas Wagner 002; Stefan Schuster; Reimar Pfeil; Andreas Stelzer (IEEE Trans. Instrum. Meas., 2013)

Model-Based Identification Method for Pulse Position Coded Surface Acoustic Wave Identification Tags. - Maria Klaffenbock; Stefan Schuster; Stefan Scheiblhofer; Andreas Stelzer (IEEE Trans. Instrum. Meas., 2014)

Hardware and Signal Processing for a Novel Multi-Lap-Joint Measurement System for Automated Welding Applications. - Jochen O. Schrattenecker; Stefan Schuster; Werner Scheiblhofer; Guenther Reinthaler; Helmut Ennsbrunner; Andreas Stelzer (IEEE Trans. Instrum. Meas., 2014)

A minimal model for explaining the higher ATP production in the Warburg effect. - Stefan Schuster; Daniel Boley; Philip Möller; Christoph Kaleta (PeerJ Prepr., 2015)

Robust Acoustic Positioning for Safety Applications in Underground Mining. - Reimar Pfeil; Markus Pichler; Stefan Schuster; Florian Hammer (IEEE Trans. Instrum. Meas., 2015)

Statistics Instead of Stopover - Range Predictions for Electric Vehicles. - Christian Kluge; Stefan Schuster; Diana Sellner (OR, 2016)

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities. - Sebastian Germerodt; Katrin Bohl; Anja Lück; Samay Pande; Anja Schröter; Christoph Kaleta; Stefan Schuster; Christian Kost (PLoS Comput. Biol., 2016)

Topological Analysis of Metabolic and Regulatory Networks. - Stefan Schuster; Björn H. Junker (Modeling in Systems Biology, The Petri Net Approach, 2016)

Parameter estimation and performance bounds for radiometric model-based non-contact temperature measurements. - Dominik Exel; Bernhard G. Zagar; Stefan Schuster; Vera Ganglberger; Johann Reisinger (I2MTC, 2017)

Mass surveillance and technological policy options: Improving security of private communications. - Stefan Schuster; Melle van den Berg; Xabier Larrucea; Ton Slewe; Peter Ide-Kostic (Comput. Stand. Interfaces, 2017)

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. - Steffen Klamt; Georg Regensburger; Matthias P. Gerstl; Christian Jungreuthmayer; Stefan Schuster; Radhakrishnan Mahadevan; Jürgen Zanghellini; Stefan Müller 009 (PLoS Comput. Biol., 2017)

Radio-Acoustic-Sounding System - berührungslose und abstandsaufgelöste akustische Temperaturmessung im industriellen Umfeld. - Dominik Exel; Stefan Schuster; Kurt Thaller; Bernhard G. Zagar; Dominik Zankl; Stefan Scheiblhofer; Vera Ganglberger; Johann Reisinger (Elektrotech. Informationstechnik, 2018)

Noise Variance and Signal-to-Noise Ratio Estimation from Spectral Data. - Stefan Schuster; Dominik Exel; Stefan Scheiblhofer; Dominik Zankl; Vera Ganglberger; Johann Reisinger; Bernhard G. Zagar (I2MTC, 2019)

Accuracy Bounds and Measurements of a Contactless Permittivity Sensor for Gases Using Synchronized Low-Cost mm-Wave Frequency Modulated Continuous Wave Radar Transceivers. - Andreas Och; Jochen O. Schrattenecker; Stefan Schuster; Patrick A. Hölzl; Philipp F. Freidl; Stefan Scheiblhofer; Dominik Zankl; Robert Weigel (Sensors, 2019)

Joint Calibration and Tomography based on Separable Least Squares Approach with Constraints on Linear and Non-Linear Parameters. - Venkata Pathuri Bhuvana; Stefan Schuster; Andreas Och (EUSIPCO, 2020)

Parasitic resistance as a predictor of faulty anodes in electro galvanizing: a comparison of machine learning, physical and hybrid models. - Mario Lovric; Richard Meister; Thomas Steck; Leon Fadljevic; Johann Gerdenitsch; Stefan Schuster; Lukas Schiefermüller; Stefanie N. Lindstaedt; Roman Kern (Adv. Model. Simul. Eng. Sci., 2020)

Determination of scoring functions for protein damage susceptibility. - Maximilian Fichtner; Stefan Schuster; Heiko Stark (Biosyst., 2020)

Auto-calibration and Tomographic Reconstruction of Permittivity using a High Resolution Radar System. - Venkata Pathuri Bhuvana; Andreas Och; Stefan Schuster (ACSCC, 2021)

Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. - Jan Ewald; Flora Rivieccio; Lukás Radosa; Stefan Schuster; Axel A. Brakhage; Christoph Kaleta (PLoS Comput. Biol., 2021)

Acoustic Temperature Tomography using a UNet based Deep Learning Approach. - Messay Tafesse Tamire; Venkata Pathuri Bhuvana; Bernhard Lehner; Stefan Schuster; Andreas Och; Muhammad Nadeem Akram (EUSIPCO, 2022)

Acoustic Condition Monitoring: Signal Analysis for Large Machinery Halls. - Christof Pichler; Markus Neumayer; Bernhard Schweighofer; Christoph Feilmayr; Stefan Schuster; Stefan Puttinger; Hannes Wegleiter (I2MTC, 2022)

Bias, Variance, and Threshold Level of the Least Squares Pitch Estimator with Windowed Data. - Jonas Lindenberger; Stefan Schuster; Oliver Lang; Alexander Haberl; Clemens Staudinger; Theresa Roland; Mario Huemer (ACSSC, 2023)

Reinhart Heinrich: In memoriam of an exceptional scholar. - Stefan Schuster (Biosyst., 2023)

Threshold Effect of Neural Network-Based Fundamental Frequency Estimators. - Jonas Lindenberger; Stefan Schuster; Oliver Lang; Alexander Haberl; Bernhard Lehner; Clemens Staudinger; Theresa Roland; Mario Huemer (IEEECONF, 2024)

Detection of an Approximately Periodic Sequence of Pulses for Acoustic Condition Monitoring. - Jonas Lindenberger; Christof Pichler; Stefan Schuster; Oliver Lang; Markus Neumayer; Alexander Haberl; Clemens Staudinger; Bernhard Lehner; Christoph Feilmayr; Hannes Wegleiter; Mario Huemer (EUSIPCO, 2024)

Robustness of Explainable Artificial Intelligence in Industrial Process Modelling. - Benedikt Kantz; Clemens Staudinger; Christoph Feilmayr; Johannes Wachlmayr; Alexander Haberl; Stefan Schuster; Franz Pernkopf (CoRR, 2024)

Constructing networks for comparison of collagen types. - Valentin Wesp; Lukas Scholz; Janine M. Ziermann-Canabarro; Stefan Schuster; Heiko Stark (J. Integr. Bioinform., 2024)

Input Uncertainty Attribution by Uncertainty Propagation. - Benedikt Kantz; Sophie Steger; Clemens Staudinger; Christoph Feilmayr; Johannes Wachlmayr; Alexander Haberl; Stefan Schuster; Franz Pernkopf (ICASSP, 2025)