Development and analysis of individual-based gut microbiome metabolic models. - Stefanía Magnúsdóttir (2017)

The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities. - Federico Baldini; Almut Heinken; Laurent Heirendt; Stefanía Magnúsdóttir; Ronan M. T. Fleming; Ines Thiele (Bioinform., 2019)

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. - Alberto Noronha; Jennifer Modamio; Yohan Jarosz; Elisabeth Guerard; Nicolas Sompairac; German A. Preciat Gonzalez; Anna Dröfn Daníelsdóttir; Max Krecke; Diane Merten; Hulda S. Haraldsdóttir; Almut Heinken; Laurent Heirendt; et al. (Nucleic Acids Res., 2019)

DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations. - Almut Heinken; Stefanía Magnúsdóttir; Ronan M. T. Fleming; Ines Thiele (Bioinform., 2021)

Simulation of 69 microbial communities indicates sequencing depth and false positives are major drivers of bias in prokaryotic metagenome-assembled genome recovery. - Ulisses Nunes da Rocha; Jonas Coelho Kasmanas; Rodolfo Toscan; Danilo Sipoli Sanches; Stefanía Magnúsdóttir; João Pedro Saraiva (PLoS Comput. Biol., 2024)