C-It-Loci: a knowledge database for tissue-enriched loci. - Tyler Weirick; David John; Stefanie Dimmeler; Shizuka Uchida (Bioinform., 2015)

The identification and characterization of novel transcripts from RNA-seq data. - Tyler Weirick; Giuseppe Militello; Raphael Rene Müller; David John; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2016)

RNAEditor: easy detection of RNA editing events and the introduction of editing islands. - David John; Tyler Weirick; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2017)

Screening and validation of lncRNAs and circRNAs as miRNA sponges. - Giuseppe Militello; Tyler Weirick; David John; Claudia Döring 002; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2017)

Logic programming to infer complex RNA expression patterns from RNA-seq data. - Tyler Weirick; Giuseppe Militello; Yuliya Ponomareva; David John; Claudia Döring 002; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2018)