tidyHeatmap: an R package for modular heatmap production based on tidy principles. - Stefano Mangiola; Anthony T. Papenfuss (J. Open Source Softw., 2020)

Interfacing Seurat with the R tidy universe. - Stefano Mangiola; Maria A. Doyle; Anthony T. Papenfuss (Bioinform., 2021)

cellsig plug-in enhances CIBERSORTx signature selection for multidataset transcriptomes with sparse multilevel modelling. - Md. Abdullah-Al-Kamran Khan; Jian Wu; Yuhan Sun; Alexander D. Barrow; Anthony T. Papenfuss; Stefano Mangiola (Bioinform., 2023)