An Algorithm for Finding Gene Signatures Supervised by Survival Time Data. - Stefano Maria Pagnotta; Michele Ceccarelli (KES (1), 2011)

Finding recurrent copy number alterations preserving within-sample homogeneity. - Sandro Morganella; Stefano Maria Pagnotta; Michele Ceccarelli (Bioinform., 2011)

Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles. - Davide Risso; Stefano Maria Pagnotta (Bioinform., 2021)

massiveGST: A Mann-Whitney-Wilcoxon Gene-Set Test Tool That Gives Meaning to Gene-Set Enrichment Analysis. - Luigi Cerulo; Stefano Maria Pagnotta (Entropy, 2022)