Probabilistic Soft Interventions in Conditional Gaussian Networks. - Florian Markowetz; Steffen Grossmann; Rainer Spang (AISTATS, 2005)

T-Reg Comparator: an analysis tool for the comparison of position weight matrices. - Stefan Roepcke; Steffen Grossmann; Sven Rahmann; Martin Vingron (Nucleic Acids Res., 2005)

An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. - Steffen Grossmann; Sebastian Bauer 002; Peter N. Robinson; Martin Vingron (RECOMB, 2006)

Simultaneous alignment and annotation of cis-regulatory regions. - Abha Singh Bais; Steffen Grossmann; Martin Vingron (Bioinform., 2007)

Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis. - Steffen Grossmann; Sebastian Bauer 002; Peter N. Robinson; Martin Vingron (Bioinform., 2007)

Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration. - Sebastian Bauer 002; Steffen Grossmann; Martin Vingron; Peter N. Robinson (Bioinform., 2008)