Contig selection in physical mapping. - Steffen Heber; Jens Stoye; Jörg D. Hoheisel; Martin Vingron (RECOMB, 2000)

Contig Selection in Physical Mapping. - Steffen Heber; Jens Stoye; Marcus Frohme; Jörg D. Hoheisel; Martin Vingron (J. Comput. Biol., 2000)

Finding All Common Intervals of k Permutations. - Steffen Heber; Jens Stoye (CPM, 2001)

Algorithms for Finding Gene Clusters. - Steffen Heber; Jens Stoye (WABI, 2001)

Common intervals and sorting by reversals: a marriage of necessity. - Anne Bergeron; Steffen Heber; Jens Stoye (ECCB, 2002)

Splicing graphs and EST assembly problem. - Steffen Heber; Max A. Alekseyev; Sing-Hoi Sze; Haixu Tang; Pavel A. Pevzner (ISMB, 2002)

Common intervals of trees. - Steffen Heber; Carla D. Savage (Inf. Process. Lett., 2005)

RACE: Remote Analysis Computation for gene Expression data. - Michael Psarros; Steffen Heber; Manuela Sick; Gnanasekaran Thoppae; Keith Harshman; Beate Sick (Nucleic Acids Res., 2005)

Automatic quality assessment of Affymetrix GeneChip data. - Steffen Heber; Beate Sick (ACM Southeast Regional Conference, 2006)

Finding association rules of cis-regulatory elements involved in alternative splicing. - Jihye Kim 005; Sihui Zhao; Steffen Heber (ACM Southeast Regional Conference, 2007)

Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier. - Brian E. Howard; Beate Sick; Imara Perera; Yang Ju Im; Heike Winter-Sederoff; Steffen Heber (BIBE, 2007)

Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing. - Sihui Zhao; Jihye Kim 005; Steffen Heber (BIBE, 2007)

Statistical Approaches to Identifying Androgen Response Elements. - Li Li; Steffen Heber; Qiang Zhang; Melvin E. Andersen (ICDM Workshops, 2007)

Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. - Degui Zhi; Uri Keich; Pavel A. Pevzner; Steffen Heber; Haixu Tang (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression. - Brian E. Howard; Beate Sick; Steffen Heber (ISBRA, 2009)

Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. - Jihye Kim 005; Sihui Zhao; Brian E. Howard; Steffen Heber (ISBRA, 2009)

Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates. - Sihui Zhao; Jihye Kim 005; Steffen Heber (ISBRA, 2009)

Unsupervised assessment of microarray data quality using a Gaussian mixture model. - Brian E. Howard; Beate Sick; Steffen Heber (BMC Bioinform., 2009)

Towards reliable isoform quantification using RNA-SEQ data. - Brian E. Howard; Steffen Heber (BMC Bioinform., 2010)

Improved RNA-Seq Partitions in Linear Models for Isoform Quantification. - Brian E. Howard; Paola Veronese; Steffen Heber (BIBM, 2011)

Workshop: Using a transcript catalog and paired-end RNA-Seq data to identify differential alternative splicing. - Brian E. Howard; Xiaoping Tan; Paola Veronese; Steffen Heber (ICCABS, 2011)

Common Intervals of Multiple Permutations. - Steffen Heber; Richard Mayr; Jens Stoye (Algorithmica, 2011)

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants. - Karen Merchante; Qiwen Hu; Anna N. Stepanova; José M. Alonso; Steffen Heber (ICCABS, 2013)

Mining transcript features related to translation in Arabidopsis using LASSO and random forest. - Qiwen Hu; Catharina Merchante; Anna N. Stepanova; José M. Alonso; Steffen Heber (ICCABS, 2015)

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana. - Qiwen Hu; Catharina Merchante; Anna N. Stepanova; José M. Alonso; Steffen Heber (ISBRA, 2015)

Biogeography-based rule mining for classification. - Effat Farhana; Steffen Heber (GECCO, 2017)

riboStreamR: A web application for quality control, analysis, and visualization of Ribo-seq data. - Patrick Perkins; Steffen Heber (ICCABS, 2017)

A parallel island model for biogeography-based classification rule mining in julia. - Samuel Ebert; Effat Farhana; Steffen Heber (GECCO (Companion), 2018)

Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection Algorithm. - Patrick Perkins; Steffen Heber (ICCABS, 2018)

Identifying the Signatures of Missing Transcripts. - Bhupinder Sehra; Effat Farhana; Steffen Heber (ICCABS, 2018)

Using a Novel Negative Selection Inspired Anomaly Detection Algorithm to Identify Corrupted Ribo-seq and RNA-seq Samples. - Patrick Perkins; Steffen Heber (BCB, 2019)

RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data. - Patrick Perkins; Anna N. Stepanova; José M. Alonso; Steffen Heber (ICCABS, 2019)

PeakPass: Automating ChIP-Seq Blacklist Creation. - Charles E. Wimberley; Steffen Heber (J. Comput. Biol., 2020)

A New Discrete Whale Optimization Algorithm with a Spiral 3-opt Local Search for Solving the Traveling Salesperson Problem. - Elias Rotondo; Steffen Heber (ISMSI, 2022)