Improving ChIP-seq peak-calling for functional co-regulator binding by integrating multiple sources of biological information. - Hatice U. Osmanbeyoglu; Ryan J. Hartmaier; Steffi Oesterreich; Xinghua Lu (BMC Genom., 2012)

Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density. - Claudia Coronnello; Ryan J. Hartmaier; Arshi Arora; Luai Huleihel; Kusum V. Pandit; Abha S. Bais; Michael Butterworth; Naftali Kaminski; Gary D. Stormo; Steffi Oesterreich; Panayiotis V. Benos (PLoS Comput. Biol., 2012)

Bias correction for selecting the minimal-error classifier from many machine learning models. - Ying Ding; Shaowu Tang; Serena G. Liao; Jia Jia; Steffi Oesterreich; Yan Lin; George C. Tseng (Bioinform., 2014)

A Joint Bayesian Model for Integrating Microarray and RNA Sequencing Transcriptomic Data. - Tianzhou Ma; Faming Liang; Steffi Oesterreich; George C. Tseng (J. Comput. Biol., 2017)

MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis. - Tianzhou Ma; Zhiguang Huo; Anche Kuo; Li Zhu; Zhou Fang; Xiangrui Zeng; Chien-Wei Lin; Silvia Liu; Lin Wang; Peng Liu; Tanbin Rahman; Lun-Ching Chang; et al. (Bioinform., 2019)

Network-guided prediction of aromatase inhibitor response in breast cancer. - Matthew Ruffalo; Roby Thomas; Jian Chen; Adrian V. Lee; Steffi Oesterreich; Ziv Bar-Joseph (PLoS Comput. Biol., 2019)

Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer. - Haoyun Lei; Xiaoyan A. Guo; Yifeng Tao; Kai Ding; Xuecong Fu; Steffi Oesterreich; Adrian V. Lee; Russell Schwartz (Bioinform., 2022)

Systems approach for congruence and selection of cancer models towards precision medicine. - Jian Zou; Osama Shah; Yu-Chiao Chiu; Tianzhou Ma; Jennifer M. Atkinson; Steffi Oesterreich; Adrian V. Lee; George C. Tseng (PLoS Comput. Biol., 2024)