Bilinear system as a modelling framework for analysis of microalgal growth. - Stepán Papácek; Sergej Celikovský; Dalibor Stys; José Javier Ruiz-León (Kybernetika, 2007)

Model for Photosynthesis and Photoinhibition: Parameter Identification Based on the Harmonic Irradiation O2 Response Measurement. - Branislav Rehák; Sergej Celikovský; Stepán Papácek (IEEE Trans. Autom. Control., 2008)

Experimental design for parameter estimation of two time-scale model of photosynthesis and photoinhibition in microalgae. - Stepán Papácek; Sergej Celikovský; Branislav Rehák; Dalibor Stys (Math. Comput. Simul., 2010)

Singular Perturbation Based Solution to Optimal Microalgal Growth Problem and Its Infinite Time Horizon Analysis. - Sergej Celikovský; Stepán Papácek; Alejandro Cervantes Herrera; Javier Ruiz-León (IEEE Trans. Autom. Control., 2010)

Growth impact of hydrodynamic dispersion in a Couette-Taylor bioreactor. - Stepán Papácek; Václav Stumbauer; Dalibor Stys; Karel Petera; Ctirad Matonoha (Math. Comput. Model., 2011)

On Measurement of Internal Variables of Complex Self-Organized Systems and Their Relation to Multifractal Spectra. - Dalibor Stys; Petr Jizba; Stepán Papácek; Tomás Náhlík; Petr Císar (IWSOS, 2012)

Modelling and simulation of photosynthetic microorganism growth: random walk vs. finite difference method. - Stepán Papácek; Ctirad Matonoha; Václav Stumbauer; Dalibor Stys (Math. Comput. Simul., 2012)

Estimation of diffusivity of phycobilisomes on thylakoid membrane based on spatio-temporal FRAP images. - Stepán Papácek; Radek Kana; Ctirad Matonoha (Math. Comput. Model., 2013)

Parameter Identification Problem Based on FRAP Images: From Data Processing to Optimal Design of Photobleaching Experiments. - Ctirad Matonoha; Stepán Papácek (HPCSE, 2015)

Model of the Belousov-Zhabotinsky Reaction. - Dalibor Stys; Tomás Náhlík; Anna Zhyrova; Renata Rychtáriková; Stepán Papácek; Petr Císar (HPCSE, 2015)

BioWes - From Design of Experiment, through Protocol to Repository, Control, Standardization and Back-Tracking. - Antonín Bárta; Petr Císar; Dmytro Soloviov; Pavel Soucek; Dalibor Stys; Stepán Papácek; Aliaksandr Pautsina; Renata Rychtáriková; Jan Urban (IWBBIO (2), 2015)

FRAP & FLIP: Two Sides of the Same Coin? - Stepán Papácek; Jiri Jablonsky; Ctirad Matonoha; Radek Kana; Stefan Kindermann 001 (IWBBIO (2), 2015)

On the connection and equivalence of two methods for solving an ill-posed inverse problem based on FRAP data. - Ctirad Matonoha; Stepán Papácek (J. Comput. Appl. Math., 2015)

On Optimization of FRAP Experiments: Model-Based Sensitivity Analysis Approach. - Stepán Papácek; Stefan Kindermann 001 (IWBBIO, 2016)

Disc vs. Annulus: On the Bleaching Pattern Optimization for FRAP Experiments. - Ctirad Matonoha; Stepán Papácek; Stefan Kindermann 001 (HPCSE, 2017)

Modeling and Simulation of Microalgae Growth in a Couette-Taylor Bioreactor. - Stepán Papácek; Ctirad Matonoha; Karel Petera (HPCSE, 2017)

Kinetic Modelling of Processes Behind S _2, 3 -states Deactivation in Photosynthetic Oxygen Evolution. - Jiri Jablonsky; Stepán Papácek (IWBBIO (2), 2017)

Towards Integration of CFD and Photosynthetic Reaction Kinetics in Modeling of Microalgae Culture Systems. - Stepán Papácek; Jiri Jablonsky; Karel Petera (IWBBIO (2), 2017)

Closed-form formulas vs. PDE based numerical solution for the FRAP data processing: Theoretical and practical comparison. - Stepán Papácek; Benn Macdonald; Ctirad Matonoha (Comput. Math. Appl., 2017)

Advanced integration of fluid dynamics and photosynthetic reaction kinetics for microalgae culture systems. - Stepán Papácek; Jiri Jablonsky; Karel Petera (BMC Syst. Biol., 2018)

Optimization of the shape (and topology) of the initial conditions for diffusion parameter identification. - Stefan Kindermann 001; Stepán Papácek (Comput. Math. Appl., 2019)

Biochemical network of drug-induced enzyme production: Parameter estimation based on the periodic dosing response measurement. - Volodymyr Lynnyk; Stepán Papácek; Branislav Rehák (Kybernetika, 2021)