QPCR: Application for real-time PCR data management and analysis. - Stephan Pabinger; Gerhard G. Thallinger; René Snajder; Heiko Eichhorn; Robert Rader; Zlatko Trajanoski (BMC Bioinform., 2009)

MEMOSys: Bioinformatics platform for genome-scale metabolic models. - Stephan Pabinger; Robert Rader; Rasmus Agren; Jens Nielsen; Zlatko Trajanoski (BMC Syst. Biol., 2011)

GAGE-B: an evaluation of genome assemblers for bacterial organisms. - Tanja Magoc; Stephan Pabinger; Stefan Canzar; Xinyue Liu; Qi Su; Daniela Puiu; Luke J. Tallon; Steven L. Salzberg (Bioinform., 2013)

[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem. - Andreas Dander; Laurin A. J. Mueller; Ralf Gallasch; Stephan Pabinger; Frank Emmert-Streib; Armin Graber; Matthias Dehmer (Source Code Biol. Medicine, 2013)

A survey of tools for variant analysis of next-generation genome sequencing data. - Stephan Pabinger; Andreas Dander; Maria Fischer; René Snajder; Michael Sperk; Mirjana Efremova; Birgit Krabichler; Michael R. Speicher; Johannes Zschocke; Zlatko Trajanoski (Briefings Bioinform., 2014)

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data. - Stephan Pabinger; René Snajder; Timo Hardiman; Michaela Willi; Andreas Dander; Zlatko Trajanoski (Database J. Biol. Databases Curation, 2014)

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages. - Andreas Dander; Matthias Baldauf; Michael Sperk; Stephan Pabinger; Benjamin Hiltpolt; Zlatko Trajanoski (BMC Bioinform., 2014)

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases. - Dominik Schweiger; Zlatko Trajanoski; Stephan Pabinger (BMC Bioinform., 2014)

ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research. - Ram Vinay Pandey; Stephan Pabinger; Albert Kriegner; Andreas Weinhäusel (BMC Bioinform., 2016)

Oli2go: an automated multiplex oligonucleotide design tool. - Michaela Hendling; Stephan Pabinger; Konrad Peters; Noa Wolff; Rick Conzemius; Ivan Barisic (Nucleic Acids Res., 2018)

EPIC-TABSAT: analysis tool for targeted bisulfite sequencing experiments and array-based methylation studies. - Julie Krainer; Andreas Weinhäusel; Karel Hanak; Walter Pulverer; Seza Özen; Klemens Vierlinger; Stephan Pabinger (Nucleic Acids Res., 2019)