Automatic reading of hybridization filter images. - Stéphane Audic; Gianluigi Zanetti (Comput. Appl. Biosci., 1995)

The statistical significance of nucleotide position-weight matrix matches. - Jean-Michel Claverie; Stéphane Audic (Comput. Appl. Biosci., 1996)

Detection of Eukaryotic Promoters Using Markov Transition Matrices. - Stéphane Audic; Jean-Michel Claverie (Comput. Chem., 1997)

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. - Fabrice Armougom; Sébastien Moretti; Olivier Poirot; Stéphane Audic; Pierre Dumas; Basile Schaeli; Vladimir Keduas; Cédric Notredame (Nucleic Acids Res., 2006)

PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. - Sébastien Moretti; Frédéric Reinier; Olivier Poirot; Fabrice Armougom; Stéphane Audic; Vladimir Keduas; Cédric Notredame (Nucleic Acids Res., 2006)

Phylogeny.fr: robust phylogenetic analysis for the non-specialist. - Alexis Dereeper; Valentin Guignon; Guillaume Blanc; Stéphane Audic; S. Buffet; François Chevenet; Jean-François Dufayard; Stéphane Guindon; Vincent Lefort; Magali Lescot; Jean-Michel Claverie; Olivier Gascuel (Nucleic Acids Res., 2008)

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy. - Laure Guillou; Dipankar Bachar; Stéphane Audic; David Bass; Cédric Berney; Lucie Bittner; Christophe Boutte; Gaétan Burgaud; Colomban de Vargas; Johan Decelle; Javier del Campo; John R. Dolan; et al. (Nucleic Acids Res., 2013)

MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution. - Dominique Boeuf; Stéphane Audic; Loraine Brillet-Guéguen; Christophe Caron; Christian Jeanthon (Database J. Biol. Databases Curation, 2015)