Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences. - Nathalie Pavy; Stephane Rombauts; Patrice Déhais; Catherine Mathé; Ramana V. Davuluri; Philippe Leroy; Pierre Rouzé (Bioinform., 1999)

PlantCARE, a plant cis-acting regulatory element database. - Stephane Rombauts; Patrice Déhais; Marc Van Montagu; Pierre Rouzé (Nucleic Acids Res., 1999)

A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. - Gert Thijs; Kathleen Marchal; Magali Lescot; Stephane Rombauts; Bart De Moor; Pierre Rouzé; Yves Moreau (RECOMB, 2001)

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. - Gert Thijs; Magali Lescot; Kathleen Marchal; Stephane Rombauts; Bart De Moor; Pierre Rouzé; Yves Moreau (Bioinform., 2001)

INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. - Gert Thijs; Yves Moreau; Frank De Smet; Janick Mathys; Magali Lescot; Stephane Rombauts; Pierre Rouzé; Bart De Moor; Kathleen Marchal (Bioinform., 2002)

A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. - Gert Thijs; Kathleen Marchal; Magali Lescot; Stephane Rombauts; Bart De Moor; Pierre Rouzé; Yves Moreau (J. Comput. Biol., 2002)

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. - Magali Lescot; Patrice Déhais; Gert Thijs; Kathleen Marchal; Yves Moreau; Yves Van de Peer; Pierre Rouzé; Stephane Rombauts (Nucleic Acids Res., 2002)

AFLPinSilico, simulating AFLP fingerprints. - Stephane Rombauts; Yves Van de Peer; Pierre Rouzé (Bioinform., 2003)

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. - Sébastien Aubourg; Véronique Brunaud; Clémence Bruyère; J. Mark Cock; Richard Cooke 003; Annick Cottet; Arnaud Couloux; Patrice Déhais; Gilbert Deléage; Aymeric Duclert; Manuel Echeverria; Aimée Eschbach; et al. (Nucleic Acids Res., 2005)

Jabba: hybrid error correction for long sequencing reads. - Giles Miclotte; Mahdi Heydari; Piet Demeester; Stephane Rombauts; Yves Van de Peer; Pieter Audenaert; Jan Fostier (Algorithms Mol. Biol., 2016)

OMSim: a simulator for optical map data. - Giles Miclotte; Stéphane Plaisance; Stephane Rombauts; Yves Van de Peer; Pieter Audenaert; Jan Fostier (Bioinform., 2017)