ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour. - Stephanie Evans; Kieran Alden; Lourdes Cucurull-Sanchez; Christopher Larminie; Mark C. Coles; Marika C. Kullberg; Jon Timmis (PLoS Comput. Biol., 2017)

Systems biology predicts that fibrosis in tuberculous granulomas may arise through macrophage-to-myofibroblast transformation. - Stephanie Evans; J. Russell Butler; Joshua T. Mattila; Denise E. Kirschner (PLoS Comput. Biol., 2020)

The NOSTRA model: Coherent estimation of infection sources in the case of possible nosocomial transmission. - David J. Pascall; Christopher Jackson; Stephanie Evans; Theodore Gouliouris; Christopher J. R. Illingworth; Stefan G. Piatek; Julie V. Robotham; Oliver Stirrup; Ben Warne; Judith Breuer; Daniela De Angelis (PLoS Comput. Biol., 2025)