FindPath: a Matlab solution for in silico design of synthetic metabolic pathways. - Gilles Vieira; Marc Carnicer; Jean-Charles Portais; Stéphanie Heux (Bioinform., 2014)

MetExplore: collaborative edition and exploration of metabolic networks. - Ludovic Cottret; Clément Frainay; Maxime Chazalviel; Floréal Cabanettes; Yoann Gloaguen; Etienne Camenen; Benjamin Merlet; Stéphanie Heux; Jean-Charles Portais; Nathalie Poupin; Florence Vinson; Fabien Jourdan (Nucleic Acids Res., 2018)

ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks. - Pierre Millard; Uwe Schmitt; Patrick Kiefer; Julia A. Vorholt; Stéphanie Heux; Jean-Charles Portais (PLoS Comput. Biol., 2020)