Ensembler: A Simple Package for Fast Prototyping and Teaching Molecular Simulations. - Benjamin Ries; Stephanie M. Linker; David F. Hahn; Gerhard König; Sereina Riniker (J. Chem. Inf. Model., 2021)

NanoGen: A High-affinity Nanobody Generation Model with Guided Diffusion. - Dezhi Wu; Xuejiao Liu; Yiming Qin; Stephanie M. Linker; Karin Hrovatin; Alexander V. Hopp; Feng Tan (ICASSP, 2025)