Extreme Learning Machine for Predicting HLA-Peptide Binding. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong; Guanglan Zhang; Vladimir Brusic (ISNN (2), 2006)

A study on constrained MA using GA and SQP: Analytical vs. finite-difference gradients. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong; Meng-Hiot Lim (IEEE Congress on Evolutionary Computation, 2008)

Using classification for constrained memetic algorithm: A new paradigm. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong (SMC, 2008)

Classification-Assisted Memetic Algorithms for Equality-Constrained Optimization Problems. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong (Australasian Conference on Artificial Intelligence, 2009)

A possible mutation that enables H1N1 influenza a virus to escape antibody recognition. - Chinh T. T. Su; Stephanus Daniel Handoko; Chee Keong Kwoh 001; Christian Schönbach; Xiaoli Li 001 (BIBM, 2010)

Structural analysis of (TCR - )HLA/peptide complexes: An initial study. - Stephanus Daniel Handoko; Chinh Tran To Su; Chee Keong Kwoh 001; Yew-Soon Ong (BIBM Workshops, 2010)

Feasibility Structure Modeling: An Effective Chaperone for Constrained Memetic Algorithms. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong (IEEE Trans. Evol. Comput., 2010)

Classification-assisted memetic algorithms for solving optimization problems with restricted equality constraint function mapping. - Stephanus Daniel Handoko; Chee Keong Kwoh 001; Yew-Soon Ong; Jonathan H. Chan (IEEE Congress on Evolutionary Computation, 2011)

A tree-structured covalent-bond-driven molecular memetic algorithm for optimization of ring-deficient molecules. - Mostafa Mostafa Hashim Ellabaan; Stephanus Daniel Handoko; Yew-Soon Ong; Chee Keong Kwoh 001; S. A. Bahnassy; F. M. Elassawy; H. Y. Man (Comput. Math. Appl., 2012)

QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization. - Stephanus Daniel Handoko; Xuchang Ouyang; Chinh Tran To Su; Chee Keong Kwoh 001; Yew-Soon Ong (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Erratum to "QuickVina: Accelerating AutoDock Vina Using Gradient-Based Heuristics for Global Optimization". - Stephanus Daniel Handoko; Xuchang Ouyang; Chinh Tran To Su; Chee Keong Kwoh 001; Yew-Soon Ong (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Discovering Unique, Low-Energy Transition States Using Evolutionary Molecular Memetic Computing. - Mostafa Mostafa Hashim Ellabaan; Yew-Soon Ong; Stephanus Daniel Handoko; Chee Keong Kwoh 001; H. Y. Man (IEEE Comput. Intell. Mag., 2013)

Constraint-oriented refinement-efficacious memetic algorithms for efficient optimization of computationally-expensive problems - Stephanus Daniel Handoko (2013)

An auction mechanism for the last-mile deliveries via urban consolidation centre. - Stephanus Daniel Handoko; Duc Thien Nguyen; Hoong Chuin Lau (CASE, 2014)

Reinforcement learning for adaptive operator selection in memetic search applied to quadratic assignment problem. - Stephanus Daniel Handoko; Duc Thien Nguyen; Zhi Yuan; Hoong Chuin Lau (GECCO (Companion), 2014)

Building algorithm portfolios for memetic algorithms. - Mustafa Misir; Stephanus Daniel Handoko; Hoong Chuin Lau (GECCO (Companion), 2014)

An Empirical Study of Off-Line Configuration and On-Line Adaptation in Operator Selection. - Zhi Yuan; Stephanus Daniel Handoko; Duc Thien Nguyen; Hoong Chuin Lau (LION, 2014)

An auction with rolling horizon for urban consolidation centre. - Chen Wang; Stephanus Daniel Handoko; Hoong Chuin Lau (SOLI, 2014)

Algorithm Selection via Ranking. - Richard Jayadi Oentaryo; Stephanus Daniel Handoko; Hoong Chuin Lau (AAAI, 2015)

Efficient order sharing with privacy preservation via double auction with split delivery. - Stephanus Daniel Handoko; Hoong Chuin Lau (CASE, 2015)

Solving multi-vehicle profitable tour problem via knowledge adoption in evolutionary bi-level programming. - Stephanus Daniel Handoko; Hoong Chuin Lau; Abhishek Gupta 001; Yew-Soon Ong; Chen Kim Heng; Puay Siew Tan (CEC, 2015)

ADVISER: A Web-Based Algorithm Portfolio Deviser. - Mustafa Misir; Stephanus Daniel Handoko; Hoong Chuin Lau (LION, 2015)

OSCAR: Online Selection of Algorithm Portfolios with Case Study on Memetic Algorithms. - Mustafa Misir; Stephanus Daniel Handoko; Hoong Chuin Lau (LION, 2015)

Fast, accurate, and reliable molecular docking with QuickVina 2. - Amr Alhossary; Stephanus Daniel Handoko; Yuguang Mu; Chee Keong Kwoh 001 (Bioinform., 2015)

Landscape synergy in evolutionary multitasking. - Abhishek Gupta 001; Yew-Soon Ong; Bingshui Da; Liang Feng 001; Stephanus Daniel Handoko (CEC, 2016)

Self-organizing Neural Network for Adaptive Operator Selection in Evolutionary Search. - Teck-Hou Teng; Stephanus Daniel Handoko; Hoong Chuin Lau (LION, 2016)

Achieving Economic and Environmental Sustainabilities in Urban Consolidation Center With Bicriteria Auction. - Stephanus Daniel Handoko; Hoong Chuin Lau; Shih-Fen Cheng (IEEE Trans Autom. Sci. Eng., 2016)