An Analyzer for the Information Content of Sentences (Semantics). - Stephen B. Johnson (1987)

Research Paper: Knowledge-based Approaches to the Maintenance of a Large Controlled Medical Terminology. - James J. Cimino; Paul D. Clayton; George Hripcsak; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1994)

Research Paper: A General Natural-language Text Processor for Clinical Radiology. - Carol Friedman; Philip O. Alderson; John H. M. Austin; James J. Cimino; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1994)

Research Paper: A Schema for Representing Medical Language Applied to Clinical Radiology. - Carol Friedman; James J. Cimino; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1994)

Two Applications of Statistical Modelling to Natural Language Processing. - William DuMouchel; Carol Friedman; George Hripcsak; Stephen B. Johnson; Paul D. Clayton (AISTATS, 1995)

Natural language processing in an operational clinical information system. - Carol Friedman; George Hripcsak; William DuMouchel; Stephen B. Johnson; Paul D. Clayton (Nat. Lang. Eng., 1995)

Model Formulation: Generic Data Modeling for Clinical Rrepositories. - Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1996)

Generic database design for patient management information. - Stephen B. Johnson; T. Paul; A. Khenina (AMIA, 1997)

Security architecture for multi-site patient records research. - Fred M. Behlen; Stephen B. Johnson (AMIA, 1999)

A technique for semantic classification of unknown words using UMLS resources. - David A. Campbell; Stephen B. Johnson (AMIA, 1999)

Extended SQL for manipulating clinical warehouse data. - Stephen B. Johnson; Damianos Chatziantoniou (AMIA, 1999)

Use of the Extensible Stylesheet Language (XSL) for medical data transformation. - Yoon-Ho Seol; Stephen B. Johnson; Justin B. Starren (AMIA, 1999)

New Dogs for Old Tricks: Finite State Modeling and XML for Access to Legacy Systems. - Justin Starren; Stephen B. Johnson (AMIA, 1999)

White Paper: Multicenter Patient Records Research: Security Policies and Tools. - Fred M. Behlen; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1999)

Research Paper: A Semantic Lexicon for Medical Language Processing. - Stephen B. Johnson (J. Am. Medical Informatics Assoc., 1999)

Generic data modeling for home telemonitoring of chronically ill patients. - Jinsong Cai; Stephen B. Johnson; George Hripcsak (AMIA, 2000)

Knowledge Sharing in the Construction of an Anatomical Navigational Ontology. - Michael Krauthammer; Nina Wacholder; Stephen B. Johnson; Gai Elhanan; Pat Molholt (AMIA, 2000)

Review: An Object-oriented Taxonomy of Medical Data Presentations. - Justin Starren; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2000)

Comparing syntactic complexity in medical and non-medical corpora. - David A. Campbell; Stephen B. Johnson (AMIA, 2001)

Evaluating the UMLS as a source of lexical knowledge for medical language processing. - Carol Friedman; Hongfang Liu; Lyudmila Shagina; Stephen B. Johnson; George Hripcsak (AMIA, 2001)

Using narrative reports to support a digital library. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (AMIA, 2001)

Conceptual Guidance in Information Retrieval. - Yoon-Ho Seol; Stephen B. Johnson; James J. Cimino (AMIA, 2001)

GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. - Andrey Rzhetsky; Michael Krauthammer; Tomohiro Koike; Pauline Kra; Shawn M. Gomez; Hong Yu 001; Pablo Ariel Duboué; Wubin Weng; Stephen B. Johnson; Vasileios Hatzivassiloglou; Carol Friedman (German Conference on Bioinformatics, 2001)

Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. - Robert H. Baud; Stephen B. Johnson; Christopher G. Chute; Olivier Bodenreider; Jeremy Rogers; Anita Burgun (MedInfo, 2001)

Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson; Yoon-Ho Seol (J. Biomed. Informatics, 2001)

A transformational-based learner for dependency grammars in discharge summaries. - David A. Campbell; Stephen B. Johnson (ACL Workshop on Natural Language Processing in the Biomedical Domain, 2002)

Analyzing the Semantics of patient data to rank records of literature retrieval. - Eneida A. Mendonça; Stephen B. Johnson; Yoon-Ho Seol; James J. Cimino (ACL Workshop on Natural Language Processing in the Biomedical Domain, 2002)

Representing nested semantic information in a linear string of text using XML. - Michael Krauthammer; Stephen B. Johnson; George Hripcsak; David A. Campbell; Carol Friedman (AMIA, 2002)

Using Patient Data to Rank Records of Literature Retrieval. - Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (AMIA, 2002)

Knowledge Acquisition of Generic Queries for Information Retrieval. - Yoon-Ho Seol; Stephen B. Johnson; James J. Cimino (AMIA, 2002)

The sublanguage of cross-coverage. - Peter D. Stetson; Stephen B. Johnson; Matthew Scotch; George Hripcsak (AMIA, 2002)

The cognitive demands of an innovative query user interface. - Di Wang; David R. Kaufman; Eneida A. Mendonça; Yoon-Ho Seol; Stephen B. Johnson; James J. Cimino (AMIA, 2002)

Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine Learning and Conceptual Relations in the UMLS. - Hongfang Liu; Stephen B. Johnson; Carol Friedman (J. Am. Medical Informatics Assoc., 2002)

Natural Language Processing Challenges in HIV/AIDS Clinic Notes. - Sookyung Hyun; Suzanne Bakken; Carol Friedman; Stephen B. Johnson (AMIA, 2003)

A Framework for the Biomedical Informatics Curriculum. - Stephen B. Johnson (AMIA, 2003)

A Native XML Database Design for Clinical Document Research. - Stephen B. Johnson; David A. Campbell; Michael Krauthammer; P. Karina Tulipano; Eneida A. Mendonça; Carol Friedman; George Hripcsak (AMIA, 2003)

Automatic Learning of the Morphology of Medical Language using Information Compression. - Shamim Mollah; Stephen B. Johnson (AMIA, 2003)

Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use. - Rita Kukafka; Stephen B. Johnson; Allison Linfante; John P. Allegrante (J. Biomed. Informatics, 2003)

Integrating Public Health and Computer Science Theoretical Perspectives for Developing Tailored Health Messages. - Rita Kukafka; Frances P. Morrison; Stephen B. Johnson (AAAI Technical Report (4), 2004)

A Comparison of Semantic Categories of the ISO Reference Terminology Models for Nursing and the MedLEE Natural Language Processing System. - Suzanne Bakken; Sookyung Hyun; Carol Friedman; Stephen B. Johnson (MedInfo, 2004)

Scenario-based Assessment of Physicians' Information Needs. - Yoon-Ho Seol; David R. Kaufman; Eneida A. Mendonça; James J. Cimino; Stephen B. Johnson (MedInfo, 2004)

Clinicians' Perceptions of Usability of eNote. - Janet P. Haas; Suzanne Bakken; Tiffani J. Bright; Genevieve B. Melton; Peter D. Stetson; Stephen B. Johnson (AMIA, 2005)

Analyzing the Structure and Content of Public Health Messages. - Frances P. Morrison; Rita Kukafka; Stephen B. Johnson (AMIA, 2005)

Document Ontology: Supporting Narrative Documents in Electronic Health Records. - Jason S. Shapiro; Suzanne Bakken; Sookyung Hyun; Genevieve B. Melton; Cara Schlegel; Stephen B. Johnson (AMIA, 2005)

ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives. - Suzanne Bakken; Sookyung Hyun; Carol Friedman; Stephen B. Johnson (Int. J. Medical Informatics, 2005)

Model Formulation: Modeling Electronic Discharge Summaries as a Simple Temporal Constraint Satisfaction Problem. - George Hripcsak; Li Zhou 007; Simon Parsons; Amar K. Das; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2005)

Heuristic Evaluation of eNote: an Electronic Notes System. - Tiffani J. Bright; Suzanne Bakken; Stephen B. Johnson (AMIA, 2006)

Modeling Clinical Trials Workflow in Community Practice Settings. - Sharib A. Khan; Philip R. O. Payne; Stephen B. Johnson; J. Thomas Bigger; Rita Kukafka (AMIA, 2006)

Graph theoretic modeling of large-scale semantic networks. - Michael E. Bales; Stephen B. Johnson (J. Biomed. Informatics, 2006)

Signout: A Collaborative Document with Implications for the Future of Clinical Information Systems. - Daniel M. Stein; Jesse O. Wrenn; Stephen B. Johnson; Peter D. Stetson (AMIA, 2007)

Assessing Data Relevance For Automated Generation Of A Clinical Summary. - Tielman Van Vleck; Daniel M. Stein; Peter D. Stetson; Stephen B. Johnson (AMIA, 2007)

An Unsupervised Machine Learning Approach to Segmentation of Clinician-Entered Free Text. - Jesse O. Wrenn; Peter D. Stetson; Stephen B. Johnson (AMIA, 2007)

A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. - Sharib A. Khan; Rita Kukafka; Philip R. O. Payne; J. Thomas Bigger; Stephen B. Johnson (MedInfo, 2007)

Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. - Michael E. Bales; Yves A. Lussier; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2007)

Bridging the gap between biological and clinical informatics in a graduate training program. - Stephen B. Johnson; Richard A. Friedman (J. Biomed. Informatics, 2007)

Conceptual knowledge acquisition in biomedicine: A methodological review. - Philip R. O. Payne; Eneida A. Mendonça; Stephen B. Johnson; Justin Starren (J. Biomed. Informatics, 2007)

Re-engineering Opportunities in Clinical Research using Workflow Analysis in Community Practice Settings. - Sharib A. Khan; Rita Kukafka; J. Thomas Bigger; Stephen B. Johnson (AMIA, 2008)

Content and Structure of Clinical Problem Lists: A Corpus Analysis. - Tielman Van Vleck; Adam B. Wilcox; Peter D. Stetson; Stephen B. Johnson; Noémie Elhadad (AMIA, 2008)

Model Formulation: An Electronic Health Record Based on Structured Narrative. - Stephen B. Johnson; Suzanne Bakken; Daniel Dine; Sookyung Hyun; Eneida A. Mendonça; Frances P. Morrison; Tiffani J. Bright; Tielman Van Vleck; Jesse O. Wrenn; Peter D. Stetson (J. Am. Medical Informatics Assoc., 2008)

Research Paper: Preliminary Development of the Physician Documentation Quality Instrument. - Peter D. Stetson; Frances P. Morrison; Suzanne Bakken; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2008)

A multi-level model of information seeking in the clinical domain. - Peter W. Hung; Stephen B. Johnson; David R. Kaufman; Eneida A. Mendonça (J. Biomed. Informatics, 2008)

Evaluation of a Prototype Search and Visualization System for Exploring Scientific Communities. - Michael E. Bales; David R. Kaufman; Stephen B. Johnson (AMIA, 2009)

Research Paper: Voice Capture of Medical Residents' Clinical Information Needs During an Inpatient Rotation. - Herbert S. Chase; David R. Kaufman; Stephen B. Johnson; Eneida A. Mendonça (J. Am. Medical Informatics Assoc., 2009)

Case Report: Iterative Evaluation of the Health Level 7 - Logical Observation Identifiers Names and Codes Clinical Document Ontology for Representing Clinical Document Names: A Case Report. - Sookyung Hyun; Jason S. Shapiro; Genevieve B. Melton; Cara Schlegel; Peter D. Stetson; Stephen B. Johnson; Suzanne Bakken (J. Am. Medical Informatics Assoc., 2009)

Development and evaluation of nursing user interface screens using multiple methods. - Sookyung Hyun; Stephen B. Johnson; Peter D. Stetson; Suzanne Bakken (J. Biomed. Informatics, 2009)

Using global unique identifiers to link autism collections. - Stephen B. Johnson; Glen Whitney; Matthew J. McAuliffe; Hailong Wang; Evan S. McCreedy; Leon Rozenblit; Clark C. Evans (J. Am. Medical Informatics Assoc., 2010)

Facilitating the Iterative Design of Informatics Tools to Advance the Science of Autism. - David R. Kaufman; Patrick Cronin; Leon Rozenblit; David Voccola; Amanda Horton; Alisabeth Shine; Stephen B. Johnson (MIE, 2011)

EliXR: an approach to eligibility criteria extraction and representation. - Chunhua Weng; Xiaoying Wu; Zhihui Luo 001; Mary Regina Boland; Dimitri Theodoratos; Stephen B. Johnson (J. Am. Medical Informatics Assoc., 2011)

Barriers to and Facilitators of Community-Based Health Information Technology Implementation. - Thomas R. Campion Jr.; Lisa M. Kern; Alison Edwards; Renny Thomas; Stephen B. Johnson; Rainu Kaushal (AMIA, 2012)

Health information exchange system usage patterns in three communities: Practice sites, users, patients, and data. - Thomas R. Campion Jr.; Alison Edwards; Stephen B. Johnson; Rainu Kaushal (Int. J. Medical Informatics, 2013)

An Institutional Strategy to Support Clinical Research with Centrally Managed Custom Data Repositories. - Stephen B. Johnson; Thomas R. Campion Jr.; Nonie E. Pegoraro; Leon Rozenblit; Charles Tirrell; Curt Cole (AMIA, 2014)

Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. - Chunhua Weng; Philip R. O. Payne; Mark Velez; Stephen B. Johnson; Suzanne Bakken (Nursing Informatics, 2014)

A review of approaches to identifying patient phenotype cohorts using electronic health records. - Chaitanya P. Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J. Embí; Noémie Elhadad; Stephen B. Johnson; Albert M. Lai (J. Am. Medical Informatics Assoc., 2014)

Associating co-authorship patterns with publications in high-impact journals. - Michael E. Bales; Daniel C. Dine; Jacqueline A. Merrill; Stephen B. Johnson; Suzanne Bakken; Chunhua Weng (J. Biomed. Informatics, 2014)

Automatic generation of investigator bibliographies for institutional research networking systems. - Stephen B. Johnson; Michael E. Bales; Daniel Dine; Suzanne Bakken; Paul J. Albert; Chunhua Weng (J. Biomed. Informatics, 2014)

Health Informatics Graduate Program Accreditation: CAHIIM Process and Standards Update. - Judith J. Warren; Stephen B. Johnson; Suzanne Austin Boren; Stuart M. Speedie; Günter Tusch (AMIA, 2015)

Designing an evaluation methods course in health informatics. - Jessica S. Ancker; Stephen B. Johnson (AMIA, 2016)

Data management in clinical research: Synthesizing stakeholder perspectives. - Stephen B. Johnson; Frank J. Farach; Kevin A. Pelphrey; Leon Rozenblit (J. Biomed. Informatics, 2016)

Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. - Evan Sholle; Joseph Kabariti; Stephen B. Johnson; John P. Leonard; Jyotishman Pathak; Vinay I. Varughese; Curtis L. Cole; Thomas R. Campion Jr. (AMIA, 2017)

Understanding the Role of Technology for Screening Participants in Clinical Studies. - En-Ju D. Lin; Stephen B. Johnson; Chaitanya Shivade; Peter J. Embí; Albert M. Lai (CRI, 2017)

Navigation in the electronic health record: A review of the safety and usability literature. - Lisette C. Roman; Jessica S. Ancker; Stephen B. Johnson; Yalini Senathirajah (J. Biomed. Informatics, 2017)

Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. - Prakash Adekkanattu; Evan Sholle; Joseph J. DeFerio; Jyotishman Pathak; Stephen B. Johnson; Thomas R. Campion Jr. (AMIA, 2018)

AMIA Board White Paper: AMIA 2017 core competencies for applied health informatics education at the master's degree level. - Annette L. Valenta; Eta S. Berner; Suzanne Austin Boren; Gloria J. Deckard; Christina Eldredge; Douglas B. Fridsma; Cynthia S. Gadd; Yang Gong; Todd R. Johnson; Josette Jones; E. LaVerne Manos; Kirk T. Phillips; et al. (J. Am. Medical Informatics Assoc., 2018)

Educational Communities in the Academic Forum: Sharing Knowledge and Promoting Standards. - Stephen B. Johnson; Saif S. Khairat; Suzanne Austin Boren; Vishnu Mohan; Eva LaVerne Manos; William R. Hersh (AMIA, 2019)

Rethinking System Health Management. - Edward Balaban; Stephen B. Johnson; Mykel J. Kochenderfer (CoRR, 2019)

Unifying System Health Management and Automated Decision Making. - Edward Balaban; Stephen B. Johnson; Mykel J. Kochenderfer (J. Artif. Intell. Res., 2019)

Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. - Evan Sholle; Laura C. Pinheiro; Prakash Adekkanattu; Marcos Davila; Stephen B. Johnson; Jyotishman Pathak; Sanjai Sinha; Cassidie Li; Stasi A Lubansky; Monika M. Safford; Thomas R. Campion Jr. (J. Am. Medical Informatics Assoc., 2019)

The Impact of Model and Tokenization Method Selection on a Deep Learning Classifier on Medical Text. - Juan D. Irizarry-Cole; Stephen B. Johnson; Zane Dennis (AMIA, 2020)

The national landscape of culminating experiences in master's programs in health and biomedical informatics. - Suzanne Morrison Cox; Stephen B. Johnson; Eva Shiu; Sue Boren (J. Am. Medical Informatics Assoc., 2021)

An architecture for research computing in health to support clinical and translational investigators with electronic patient data. - Thomas R. Campion Jr.; Evan Sholle; Jyotishman Pathak; Stephen B. Johnson; John P. Leonard; Curtis L. Cole (J. Am. Medical Informatics Assoc., 2022)