cis-Regulatory Element Prediction in Mammalian Genomes. - Asim S. Siddiqui; Gordon Robertson; Misha Bilenky; Tamara Astakhova; Obi L. Griffith; Maik Hassel; Keven Lin; Stephen B. Montgomery; Mehrdad Oveisi; Erin Pleasance; Neil Robertson 004; Monica C. Sleumer; et al. (CSB Workshops, 2005)

ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. - Stephen B. Montgomery; Obi L. Griffith; Monica C. Sleumer; Casey M. Bergman; Misha Bilenky; Erin Pleasance; Y. Prychyna; X. Zhang; Steven J. M. Jones (Bioinform., 2006)

cisRED: a database system for genome-scale computational discovery of regulatory elements. - Gordon Robertson; Misha Bilenky; Keven Lin; An He; W. Yuen; M. Dagpinar; Richard Varhol; Kevin Teague; Obi L. Griffith; X. Zhang; Y. Pan; Maik Hassel; et al. (Nucleic Acids Res., 2006)

A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms. - Stephen B. Montgomery; Obi L. Griffith; Johanna M. Schuetz; Angela Brooks-Wilson; Steven J. M. Jones (PLoS Comput. Biol., 2007)

ORegAnno: an open-access community-driven resource for regulatory annotation. - Obi L. Griffith; Stephen B. Montgomery; Bridget Bernier; Bryan Chu; Katayoon Kasaian; Stein Aerts; Shaun Mahony; Monica C. Sleumer; Mikhail Bilenky; Maximilian Haeussler; Malachi Griffith; Steven M. Gallo; et al. (Nucleic Acids Res., 2008)

Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies. - Tsun-Po Yang; Claude Beazley; Stephen B. Montgomery; Antigone S. Dimas; Maria Gutierrez-Arcelus; Barbara E. Stranger; Panos Deloukas; Emmanouil T. Dermitzakis (Bioinform., 2010)

PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. - Roxana Daneshjou; Zachary Zappala; Kimberly R. Kukurba; Sean M. Boyle; Kelly E. Ormond; Teri E. Klein; Michael Snyder 001; Carlos D. Bustamante; Russ B. Altman; Stephen B. Montgomery (Pacific Symposium on Biocomputing, 2014)

SplicePlot: a utility for visualizing splicing quantitative trait loci. - Eric Wu; Tracy Nance; Stephen B. Montgomery (Bioinform., 2014)

ORegAnno 3.0: a community-driven resource for curated regulatory annotation. - Robert Lesurf; Kelsy C. Cotto; Grace Wang; Malachi Griffith; Katayoon Kasaian; Steven J. M. Jones; Stephen B. Montgomery; Obi L. Griffith (Nucleic Acids Res., 2016)

FIRE: functional inference of genetic variants that regulate gene expression. - Nilah M. Ioannidis; Joe R. Davis; Marianne K. DeGorter; Nicholas B. Larson; Shannon K. McDonnell; Amy J. French; Alexis J. Battle; Trevor J. Hastie; Stephen N. Thibodeau; Stephen B. Montgomery; Carlos D. Bustamante; Weiva Sieh; et al. (Bioinform., 2017)

The impact of rare variation on gene expression across tissues. - Xin Li 130; Yungil Kim; Emily K. Tsang; Joe R. Davis; Farhan N. Damani; Colby Chiang; Gaelen T. Hess; Zachary Zappala; Benjamin J. Strober; Alexandra J. Scott; Amy Li; Andrea Ganna; et al. (Nat., 2017)

RNAget: an API to securely retrieve RNA quantifications. - Sean Upchurch; Emilio Palumbo; Jeremy Adams; David Bujold; Guillaume Bourque; Jared Nedzel; Keenan Graham; Meenakshi S. Kagda; Pedro Assis; Benjamin C. Hitz; Emilio Righi; Roderic Guigó; et al. (Bioinform., 2023)