Macromolecular conformational energy minimization: An algorithm varying pseudodihedral angles. - Stephen C. Harvey; James Andrew McCammon (Comput. Chem., 1982)

Computer graphics program to reveal the dependence of the gross three- dimensional structure of the B-DNA double helix on primary structure. - C. S. Tung; Stephen C. Harvey (Nucleic Acids Res., 1986)

AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA. - Robert K.-Z. Tan; M. Prabhakaran; C. S. Tung; Stephen C. Harvey (Comput. Appl. Biosci., 1988)

Symposium overview Minnesota Conference on Supercomputing in Biology: Proteins, Nucleic Acids, and Water. - George L. Wilcox; Florante A. Quiocho; Cyrus Levinthal; Stephen C. Harvey; Gerald M. Maggiora; James Andrew McCammon (J. Comput. Aided Mol. Des., 1988)

Yammp: Development of a molecular mechanics program using the modular programming method. - Robert K.-Z. Tan; Stephen C. Harvey (J. Comput. Chem., 1993)

Finite element approach to the electrostatics of macromolecules with arbitrary geometries. - Tony J. You; Stephen C. Harvey (J. Comput. Chem., 1993)

Utilization of Shape Data in Molecular Mechanics Using a Potential Based on Sherical Harmonic Surfaces. - Arun Mlhotra; Robert K.-Z. Tan; Stephen C. Harvey (J. Comput. Chem., 1994)

The flying ice cube: Velocity rescaling in molecular dynamics leads to violation of energy equipartition. - Stephen C. Harvey; Robert K.-Z. Tan; Thomas E. Cheatham III (J. Comput. Chem., 1998)

Program for analyzing knots represented by polygonal paths. - Brett A. Harris; Stephen C. Harvey (J. Comput. Chem., 1999)

Motifs in nucleic acids: Molecular mechanics restraints for base pairing and base stacking. - Stephen C. Harvey; Chunlin Wang; Stephane Teletchea; Richard Lavery (J. Comput. Chem., 2003)

Low-Resolution Molecular Dynamics Simulations of the 30S Ribosomal Subunit. - Qizhi Cui; Robert K.-Z. Tan; Stephen C. Harvey; David A. Case (Multiscale Model. Simul., 2006)

A Model for Viral Genome Packing. - C. Rebecca Locker; Stephen C. Harvey (Multiscale Model. Simul., 2006)

GTfold: a scalable multicore code for RNA secondary structure prediction. - Amrita Mathuriya; David A. Bader; Christine E. Heitsch; Stephen C. Harvey (SAC, 2009)

Molecular Dynamics Simulations of Forced Unbending of Integrin αVβ3. - Wei Chen; Jizhong Lou; Jen Hsin; Klaus Schulten; Stephen C. Harvey; Cheng Zhu (PLoS Comput. Biol., 2011)

Unusual RNA Structures: Information Content in RNAs from the "Prebiotic Ribosome" to Modern Viruses. - Stephen C. Harvey (ISBRA, 2013)